fix README section about python install

.github/workflows/pypi-deploy.yml

@@ -23,40 +23,13 @@ jobs:
       - name: Display files
         run: ls -lR
 
-  build_wheels_ubuntu:
+  build_wheels:
     name: Build binary wheels on ${{ matrix.os }}
     runs-on: ${{ matrix.os }}
     needs: [build_setup]
     strategy:
       matrix:
-        os: [ubuntu-latest]
-
-    steps:
-      - uses: actions/checkout@v2
-      - uses: actions/setup-python@v2
-      - name: Install cibuildwheel
-        run: python -m pip install cibuildwheel==2.1.2
-      - name: Get wheel configuration files
-        uses: actions/download-artifact@v4.1.7
-        with:
-          name: wheel-config
-          path: python/
-      - name: Build wheels
-        run: python -m cibuildwheel --output-dir wheelhouse
-        working-directory: python/
-      - name: Store binary wheels
-        uses: actions/upload-artifact@v4.6.0
-        with:
-          name: binary-wheels-${{matrix.os}}-${{ strategy.job-index }}
-          path: python/wheelhouse/*.whl
-
-  build_wheels_windows:
-    name: Build binary wheels on ${{ matrix.os }}
-    runs-on: ${{ matrix.os }}
-    needs: [build_setup]
-    strategy:
-      matrix:
-        os: [windows-latest]
+        os: [ubuntu-latest, windows-latest]
 
     steps:
       - uses: actions/checkout@v2
@@ -105,7 +78,7 @@ jobs:
   upload_pypi:
     name: Upload wheels to PyPI
     runs-on: ubuntu-24.04
-    needs: [build_wheels_ubuntu, build_wheels_windows, build_sdist]
+    needs: [build_wheels, build_sdist]
 
     steps:
       - name: Get source wheels

README.md

@@ -2,7 +2,7 @@
 [![LICENSE](https://img.shields.io/github/license/RecordEvolution/IMCtermite)](https://img.shields.io/github/license/RecordEvolution/IMCtermite)
 [![STARS](https://img.shields.io/github/stars/RecordEvolution/IMCtermite)](https://img.shields.io/github/stars/RecordEvolution/IMCtermite)
 ![CI Build Wheel](https://github.com/RecordEvolution/IMCtermite/actions/workflows/pypi-deploy.yml/badge.svg?branch=&event=push)
-[![PYPI](https://img.shields.io/pypi/v/IMCtermite.svg)](https://pypi.org/project/IMCtermite/)
+[![PYPI](https://img.shields.io/pypi/v/IMCtermite.svg)](https://pypi.org/project/imctermite/)
 
 # IMCtermite
 
@@ -131,24 +131,21 @@ which may require root permissions.
 
 ### Python
 
-To integrate the library into a customized ETL toolchain, several cython targets
+To integrate the library into a customized ETL toolchain, several python targets
 are available. For a local build that enables you to run the examples, use:
 
 ```
-make cython-build
+make python-build
 ```
 
-However, in a production environment, a proper installation of the module with
-`make cython-install` is recommended for system-wide availability of the module.
-
 #### Installation with pip
 
 The package is also available in the [Python Package Index](https://pypi.org)
-at [IMCtermite](https://pypi.org/project/IMCtermite/).
+at [imctermite](https://pypi.org/project/imctermite/).
 To install the latest version simply do
 
 ```Shell
-python3 -m pip install IMCtermite
+python3 -m pip install imctermite
 ```
 
 which provides binary wheels for multiple architectures on _Windows_ and _Linux_
@@ -195,9 +192,9 @@ Given the `IMCtermite` module is available, we can import it and declare an inst
 of it by passing a _raw_ file to the constructor:
 
 ```Python
-import IMCtermite
+import imctermite
 
-imcraw = IMCtermite.imctermite(b"sample/sampleA.raw")
+imcraw = imctermite.imctermite(b"sample/sampleA.raw")
 ```
 
 An example of how to create an instance and obtain the list of channels is:

makefile

@@ -88,11 +88,11 @@ docker-run:
 
 python-build: check-tags $(GVSN)
 	make -C python/ build-inplace
-	cp python/IMCtermite*.so ./ -v
+	cp python/imctermite*.so ./ -v
 
 python-clean:
 	make -C python/ clean
-	rm -vf IMCtermite*.so
+	rm -vf imctermite*.so
 
 python-test:
 	PYTHONPATH=./ python python/examples/usage.py

python/VERSION

@@ -1 +1 @@
-2.1.16
+2.1.18

python/examples/multichannel.py

@@ -1,5 +1,5 @@
 
-import IMCtermite
+import imctermite
 import pandas
 import datetime
 
@@ -11,7 +11,7 @@ def add_trigger_time(trigger_time, add_time) :
 if __name__ == "__main__" :
 
     # read file and extract data
-    imctm = IMCtermite.imctermite(b"Measurement.raw")
+    imctm = imctermite.imctermite(b"Measurement.raw")
     chns = imctm.get_channels(True)
     
     # prepare abscissa

python/examples/usage.py

@@ -1,11 +1,11 @@
 
-import IMCtermite
+import imctermite
 import json
 import os
 
 # declare and initialize instance of "imctermite" by passing a raw-file
 try :
-    imcraw = IMCtermite.imctermite(b"samples/exampleB.raw")
+    imcraw = imctermite.imctermite(b"samples/exampleB.raw")
 except RuntimeError as e :
     raise Exception("failed to load/parse raw-file: " + str(e))
 

python/examples/usage_adv.py

@@ -1,5 +1,5 @@
 
-import IMCtermite
+import imctermite
 import json
 import os
 
@@ -15,7 +15,7 @@ for fl in rawlist1:
 
     # declare and initialize instance of "imctermite" by passing a raw-file
     try :
-        imcraw = IMCtermite.imctermite(fl.encode())
+        imcraw = imctermite.imctermite(fl.encode())
     except RuntimeError as e :
         raise Exception("failed to load/parse raw-file: " + str(e))
 

python/examples/usage_ext.py

@@ -1,12 +1,12 @@
 
-import IMCtermite
+import imctermite
 import json
 import os
 import datetime
 
 # declare and initialize instance of "imctermite" by passing a raw-file
 try :
-    imcraw = IMCtermite.imctermite(b"samples/sampleB.raw")
+    imcraw = imctermite.imctermite(b"samples/sampleB.raw")
 except RuntimeError as e :
     raise Exception("failed to load/parse raw-file: " + str(e))
 

python/examples/usage_files.py

@@ -1,5 +1,5 @@
 
-from IMCtermite import imctermite
+import imctermite import imctermite
 
 def show_results(imcraw) :
 

python/imctermite.pyx

@@ -1,7 +1,7 @@
 # distutils: language = c++
 # cython: language_level = 3
 
-from IMCtermite cimport cppimctermite
+from imctermite cimport cppimctermite
 
 import json as jn
 import decimal

python/makefile

@@ -29,6 +29,7 @@ build-clean:
 	rm -vf imctermite*.so imctermite*.cpp
 	rm -vf IMCtermite*.so IMCtermite*.cpp
 	rm -rvf dist/ IMCtermite.egg-info/
+	rm -rvf dist/ imctermite.egg-info/
 
 cibuildwheel-build: setup
 	cibuildwheel --platform linux

python/setup.cfg

@@ -1,6 +1,6 @@
 
 [metadata]
-name = IMCtermite
+name = imctermite
 description = Enables extraction of measurement data from binary files with extension 'raw' used by proprietary software imcFAMOS and imcSTUDIO and facilitates its storage in open source file formats
 long_description = file: README.md
 # long_description_content_type = text/x-rst

python/setup.py

@@ -11,8 +11,8 @@ cmpArgs = {
 }
 
 extension = Extension(
-    "IMCtermite",
-    sources=["IMCtermite.pyx"],
+    "imctermite",
+    sources=["imctermite.pyx"],
     extra_compile_args=cmpArgs[sys.platform]
 )