fix README section about python install

.github/workflows/pypi-deploy.yml

@@ -29,8 +29,7 @@ jobs:
     needs: [build_setup]
     strategy:
       matrix:
-        os: [ubuntu-24.04, windows-2022]
-        arch: [auto32, auto64, aarch64]
+        os: [ubuntu-latest, windows-latest]
 
     steps:
       - uses: actions/checkout@v2
@@ -43,17 +42,13 @@ jobs:
           name: wheel-config
           path: python/
       - name: Build wheels
-        run: python -m cibuildwheel --output-dir wheelhouse/
+        run: python -m cibuildwheel --output-dir wheelhouse
         working-directory: python/
-        # env:
-        #   CIBW_BUILD: cp36-* cp37-* cp38-* cp39-* cp310-*
       - name: Store binary wheels
         uses: actions/upload-artifact@v4.6.0
         with:
-          name: binary-wheels-${{matrix.os}}-${{matrix.arch}}
+          name: binary-wheels-${{matrix.os}}-${{ strategy.job-index }}
           path: python/wheelhouse/*.whl
-      - name: Display files
-        run: ls -lR
 
   build_sdist:
     name: Build source distribution
@@ -81,7 +76,7 @@ jobs:
 
 
   upload_pypi:
-    name: Upload binary wheels to PyPI
+    name: Upload wheels to PyPI
     runs-on: ubuntu-24.04
     needs: [build_wheels, build_sdist]
 
@@ -94,8 +89,8 @@ jobs:
       - name: Get binary wheels
         uses: actions/download-artifact@v4.1.7
         with:
-          path: dist/binary-wheels
-          pattern: dist/binary-wheels-*
+          path: dist/
+          pattern: binary-wheels-*
           merge-multiple: true
       - name: Display files
         run: ls -lR

README.md

@@ -2,7 +2,7 @@
 [![LICENSE](https://img.shields.io/github/license/RecordEvolution/IMCtermite)](https://img.shields.io/github/license/RecordEvolution/IMCtermite)
 [![STARS](https://img.shields.io/github/stars/RecordEvolution/IMCtermite)](https://img.shields.io/github/stars/RecordEvolution/IMCtermite)
 ![CI Build Wheel](https://github.com/RecordEvolution/IMCtermite/actions/workflows/pypi-deploy.yml/badge.svg?branch=&event=push)
-[![PYPI](https://img.shields.io/pypi/v/IMCtermite.svg)](https://pypi.org/project/IMCtermite/)
+[![PYPI](https://img.shields.io/pypi/v/IMCtermite.svg)](https://pypi.org/project/imctermite/)
 
 # IMCtermite
 
@@ -131,24 +131,21 @@ which may require root permissions.
 
 ### Python
 
-To integrate the library into a customized ETL toolchain, several cython targets
+To integrate the library into a customized ETL toolchain, several python targets
 are available. For a local build that enables you to run the examples, use:
 
 ```
-make cython-build
+make python-build
 ```
 
-However, in a production environment, a proper installation of the module with
-`make cython-install` is recommended for system-wide availability of the module.
-
 #### Installation with pip
 
 The package is also available in the [Python Package Index](https://pypi.org)
-at [IMCtermite](https://pypi.org/project/IMCtermite/).
+at [imctermite](https://pypi.org/project/imctermite/).
 To install the latest version simply do
 
 ```Shell
-python3 -m pip install IMCtermite
+python3 -m pip install imctermite
 ```
 
 which provides binary wheels for multiple architectures on _Windows_ and _Linux_
@@ -195,9 +192,9 @@ Given the `IMCtermite` module is available, we can import it and declare an inst
 of it by passing a _raw_ file to the constructor:
 
 ```Python
-import IMCtermite
+import imctermite
 
-imcraw = IMCtermite.imctermite(b"sample/sampleA.raw")
+imcraw = imctermite.imctermite(b"sample/sampleA.raw")
 ```
 
 An example of how to create an instance and obtain the list of channels is:

lib/imc_channel.hpp

@@ -314,10 +314,11 @@ namespace imc
     std::vector<unsigned char>* buffer_;
 
     imc::origin_data NO_;
-
+    imc::language NL_;
     imc::text CT_;
     imc::groupobj CB_;
     imc::datafield CG_;
+    imc::channelobj CN_;
 
     // collect meta-data of channels according to env,
     // just everything valueable in here
@@ -349,7 +350,7 @@ namespace imc
     double xoffset_, yoffset_;
 
     // group reference the channel belongs to
-    int group_index_;
+    unsigned long int group_index_;
     std::string group_uuid_, group_name_, group_comment_;
 
     // constructor takes channel's block environment
@@ -362,6 +363,22 @@ namespace imc
       // use uuid from CN block
       uuid_ = chnenv_.CNuuid_;
 
+      // extract associated NO data
+      if ( blocks_->count(chnenv_.NOuuid_) == 1 )
+      {
+	NO_.parse(buffer_, blocks_->at(chnenv_.NOuuid_).get_parameters());
+	origin_ = NO_.generator_;
+	comment_ = NO_.comment_;
+      }
+
+      // extract associated NL data
+      if ( blocks_->count(chnenv_.NLuuid_) == 1 )
+      {
+	NL_.parse(buffer_, blocks_->at(chnenv_.NLuuid_).get_parameters());
+	codepage_ = NL_.codepage_;
+	language_code_ = NL_.language_code_;
+      }
+
       // extract associated CB data
       if ( blocks_->count(chnenv_.CBuuid_) == 1 )
       {
@@ -377,6 +394,15 @@ namespace imc
               + CT_.comment_;
       }
 
+      // extract associated CN data
+      if ( blocks_->count(chnenv_.CNuuid_) == 1 )
+      {
+        CN_.parse(buffer_, blocks_->at(chnenv_.CNuuid_).get_parameters());
+	group_index_ = CN_.group_index_;
+	group_name_ = CN_.name_;
+	group_comment_ = CN_.comment_;
+      }
+
       if ( !chnenv_.compenv1_.uuid_.empty() && chnenv_.compenv2_.uuid_.empty() )
       {
         // normal dataset (single component)
@@ -451,8 +477,9 @@ namespace imc
       // start converting binary buffer to imc::datatype
       if ( !chnenv_.CSuuid_.empty() ) convert_buffer();
 
-      // convert any non-UTF-8 codepage to UTF-8
+      // convert any non-UTF-8 codepage to UTF-8 and cleanse any text
       convert_encoding();
+      cleanse_text();
     }
 
     // convert buffer to actual datatype
@@ -602,6 +629,35 @@ namespace imc
       }
     }
 
+    void cleanse_text()
+    {
+      escape_backslash(name_);
+      escape_backslash(comment_);
+      escape_backslash(origin_);
+      escape_backslash(origin_comment_);
+      escape_backslash(text_);
+      escape_backslash(language_code_);
+      escape_backslash(yname_);
+      escape_backslash(yunit_);
+      escape_backslash(xname_);
+      escape_backslash(xunit_);
+      escape_backslash(group_name_);
+      escape_backslash(group_comment_);
+    }
+
+    void escape_backslash(std::string &text)
+    {
+      char backslash = 0x5c;
+      std::string doublebackslash("\\\\");
+      for ( std::string::iterator it = text.begin(); it != text.end(); ++it )
+      {
+	if ( int(*it) == backslash ) {
+	  text.replace(it,it+1,doublebackslash);
+	  ++it;
+	}
+      }
+    }
+
     // get info string
     std::string get_info(int width = 20)
     {

makefile

@@ -88,11 +88,11 @@ docker-run:
 
 python-build: check-tags $(GVSN)
 	make -C python/ build-inplace
-	cp python/IMCtermite*.so ./ -v
+	cp python/imctermite*.so ./ -v
 
 python-clean:
 	make -C python/ clean
-	rm -vf IMCtermite*.so
+	rm -vf imctermite*.so
 
 python-test:
 	PYTHONPATH=./ python python/examples/usage.py

python/VERSION

@@ -1 +1 @@
-2.1.8
+2.1.18

python/examples/multichannel.py

@@ -1,5 +1,5 @@
 
-import IMCtermite
+import imctermite
 import pandas
 import datetime
 
@@ -11,7 +11,7 @@ def add_trigger_time(trigger_time, add_time) :
 if __name__ == "__main__" :
 
     # read file and extract data
-    imctm = IMCtermite.imctermite(b"Measurement.raw")
+    imctm = imctermite.imctermite(b"Measurement.raw")
     chns = imctm.get_channels(True)
     
     # prepare abscissa

python/examples/usage.py

@@ -1,11 +1,11 @@
 
-import IMCtermite
+import imctermite
 import json
 import os
 
 # declare and initialize instance of "imctermite" by passing a raw-file
 try :
-    imcraw = IMCtermite.imctermite(b"samples/exampleB.raw")
+    imcraw = imctermite.imctermite(b"samples/exampleB.raw")
 except RuntimeError as e :
     raise Exception("failed to load/parse raw-file: " + str(e))
 

python/examples/usage_adv.py

@@ -1,5 +1,5 @@
 
-import IMCtermite
+import imctermite
 import json
 import os
 
@@ -15,7 +15,7 @@ for fl in rawlist1:
 
     # declare and initialize instance of "imctermite" by passing a raw-file
     try :
-        imcraw = IMCtermite.imctermite(fl.encode())
+        imcraw = imctermite.imctermite(fl.encode())
     except RuntimeError as e :
         raise Exception("failed to load/parse raw-file: " + str(e))
 

python/examples/usage_ext.py

@@ -1,12 +1,12 @@
 
-import IMCtermite
+import imctermite
 import json
 import os
 import datetime
 
 # declare and initialize instance of "imctermite" by passing a raw-file
 try :
-    imcraw = IMCtermite.imctermite(b"samples/sampleB.raw")
+    imcraw = imctermite.imctermite(b"samples/sampleB.raw")
 except RuntimeError as e :
     raise Exception("failed to load/parse raw-file: " + str(e))
 

python/examples/usage_files.py

@@ -1,5 +1,5 @@
 
-from IMCtermite import imctermite
+import imctermite import imctermite
 
 def show_results(imcraw) :
 

python/imctermite.pyx

@@ -1,7 +1,7 @@
 # distutils: language = c++
 # cython: language_level = 3
 
-from IMCtermite cimport cppimctermite
+from imctermite cimport cppimctermite
 
 import json as jn
 import decimal

python/makefile

@@ -29,6 +29,7 @@ build-clean:
 	rm -vf imctermite*.so imctermite*.cpp
 	rm -vf IMCtermite*.so IMCtermite*.cpp
 	rm -rvf dist/ IMCtermite.egg-info/
+	rm -rvf dist/ imctermite.egg-info/
 
 cibuildwheel-build: setup
 	cibuildwheel --platform linux

python/setup.cfg

@@ -1,6 +1,6 @@
 
 [metadata]
-name = IMCtermite
+name = imctermite
 description = Enables extraction of measurement data from binary files with extension 'raw' used by proprietary software imcFAMOS and imcSTUDIO and facilitates its storage in open source file formats
 long_description = file: README.md
 # long_description_content_type = text/x-rst

python/setup.py

@@ -11,8 +11,8 @@ cmpArgs = {
 }
 
 extension = Extension(
-    "IMCtermite",
-    sources=["IMCtermite.pyx"],
+    "imctermite",
+    sources=["imctermite.pyx"],
     extra_compile_args=cmpArgs[sys.platform]
 )