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100
.github/workflows/pypi-deploy.yml
vendored
100
.github/workflows/pypi-deploy.yml
vendored
@ -1,100 +0,0 @@
|
||||
|
||||
name: CI Build Wheel
|
||||
|
||||
on:
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||||
push:
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tags: ["v[0-9]+.[0-9]+.[0-9]+"]
|
||||
|
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jobs:
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|
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build_setup:
|
||||
name: Prepare environment for wheel builds
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runs-on: ubuntu-24.04
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steps:
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- uses: actions/checkout@v2
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- name: Prepare wheel build
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||||
run: make -C python/ setup
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||||
- name: Store wheel configuration files
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||||
uses: actions/upload-artifact@v4.6.0
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with:
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||||
name: wheel-config
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path: python/
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- name: Display files
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run: ls -lR
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|
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build_wheels:
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name: Build binary wheels on ${{ matrix.os }}
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runs-on: ${{ matrix.os }}
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needs: [build_setup]
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strategy:
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matrix:
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os: [ubuntu-latest, windows-latest]
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steps:
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- uses: actions/checkout@v2
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- uses: actions/setup-python@v2
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- name: Install cibuildwheel
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run: python -m pip install cibuildwheel==2.1.2
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- name: Get wheel configuration files
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uses: actions/download-artifact@v4.1.7
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with:
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name: wheel-config
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path: python/
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- name: Build wheels
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run: python -m cibuildwheel --output-dir wheelhouse
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working-directory: python/
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- name: Store binary wheels
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||||
uses: actions/upload-artifact@v4.6.0
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with:
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name: binary-wheels-${{matrix.os}}-${{ strategy.job-index }}
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path: python/wheelhouse/*.whl
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|
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build_sdist:
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name: Build source distribution
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runs-on: ubuntu-24.04
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needs: [build_setup]
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steps:
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- uses: actions/checkout@v2
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- name: Install cython
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run: python -m pip install cython==0.29.24
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- name: Get wheel configuration files
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uses: actions/download-artifact@v4.1.7
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with:
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name: wheel-config
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path: python/
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- name: Build sdist
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run: python setup.py sdist
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working-directory: python/
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- name: Store source wheels
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uses: actions/upload-artifact@v4.6.0
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with:
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name: source-wheels
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path: python/dist/*.tar.gz
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- name: Display files
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run: ls -lR
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|
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|
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upload_pypi:
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name: Upload wheels to PyPI
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runs-on: ubuntu-24.04
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needs: [build_wheels, build_sdist]
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|
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steps:
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- name: Get source wheels
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uses: actions/download-artifact@v4.1.7
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with:
|
||||
name: source-wheels
|
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path: dist/
|
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- name: Get binary wheels
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uses: actions/download-artifact@v4.1.7
|
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with:
|
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path: dist/
|
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pattern: binary-wheels-*
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merge-multiple: true
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- name: Display files
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run: ls -lR
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|
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- uses: pypa/gh-action-pypi-publish@release/v1
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with:
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user: __token__
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password: ${{ secrets.TDMTERMITE_GITHUB_WORKFLOW_PYPI_API_TOKEN }}
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19
.gitignore
vendored
19
.gitignore
vendored
@ -11,22 +11,3 @@ tdmripper
|
||||
*.log
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tdmreaper
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||||
cython/*.cpp
|
||||
tdmtermite
|
||||
dist/
|
||||
*.egg-info/
|
||||
output/
|
||||
monitor-process.sh
|
||||
tdmtest
|
||||
pip/*.hpp
|
||||
pip/*.md
|
||||
pip/*.cpp
|
||||
pip/*.pyx
|
||||
pip/*.pxd
|
||||
pip/LICENSE
|
||||
|
||||
python/3rdparty/
|
||||
python/LICENSE
|
||||
python/README.md
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||||
python/TDMtermite.cpp
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python/lib/
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|
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30
Dockerfile
30
Dockerfile
@ -1,30 +1,20 @@
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|
||||
FROM debian:bullseye
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FROM debian:bullseye-20210111
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|
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# install requirements
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RUN apt-get update && apt-get upgrade -y && apt-get install -y \
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||||
build-essential \
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g++ make git \
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USER root
|
||||
|
||||
RUN apt-get update && apt-get install -y \
|
||||
build-essential git \
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python3 python3-pip
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|
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# check compiler and current user
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RUN g++ -v && whoami
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RUN g++ -v
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|
||||
# use /home as working directory
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WORKDIR /home
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|
||||
# get the public TDMtermite repository
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RUN git clone https://github.com/RecordEvolution/TDMtermite.git
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COPY ./ /tdm_ripper/
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|
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# install CLI tool
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RUN cd ./TDMtermite && ls -lh && make install && ls -lh /usr/local/bin/tdmtermite
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RUN cd /tdm_ripper && ls -lh && make install && ls -lh /usr/local/bin/tdmreaper
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||||
|
||||
# install Python module
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RUN cd ./TDMtermite && ls -lh && make cython-requirements && make cython-list && make cython-install
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||||
|
||||
# create directory for data exchange
|
||||
#RUN [ "/bin/bash", "-c", "mkdir -pv data/{input,output}" ]
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||||
RUN mkdir -pv data
|
||||
|
||||
CMD ["sleep","infinity"]
|
||||
RUN cd /tdm_ripper && ls -lh && make cython-requirements && make cython-install
|
||||
|
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CMD ["sleep","inifity"]
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||||
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173
README.md
173
README.md
@ -1,20 +1,21 @@
|
||||
|
||||
[](https://img.shields.io/github/license/RecordEvolution/TDMtermite)
|
||||
[](https://img.shields.io/github/stars/RecordEvolution/TDMtermite)
|
||||
|
||||
[](https://pypi.org/project/tdmtermite/)
|
||||
<p align="center">
|
||||
<a href="https://github.com/RecordEvolution/tdm_ripper.git">
|
||||
<img
|
||||
alt="tdmreaper.svg"
|
||||
src="assets/tdmreaper.svg"
|
||||
width="400"
|
||||
/>
|
||||
</a>
|
||||
</p>
|
||||
|
||||
# TDMtermite
|
||||
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||||
_TDMtermite_ is a C++ based library that decodes the proprietary
|
||||
file format _TDM/TDX_ for measurement data. First introduced by
|
||||
[National Instruments](https://www.ni.com), the TDM format relies on the
|
||||
_technical data management_ data model and is employed by
|
||||
The _tdm_reaper_ is a C++ based library that decodes (encodes) the proprietary
|
||||
file format _TDM/TDX_ for measurement data, which relies upon the
|
||||
_technical data management_ data model. The TDM format was introduced by
|
||||
[National Instruments](https://www.ni.com) and is employed by
|
||||
[LabVIEW](https://www.ni.com/de-de/shop/labview.html), LabWindows™/CVI™,
|
||||
Measurement Studio, SignalExpress, and [DIAdem](https://www.ni.com/de-de/shop/data-acquisition-and-control/application-software-for-data-acquisition-and-control-category/what-is-diadem.html).
|
||||
|
||||
The [Record Evolution Platform](https://www.record-evolution.de/en/home-en/) uses TDMtermite to integrate measurement data into ETL processes. The TDMtermite library is available both as a command line tool and as a Python module. The Python module of TDMtermite enables data scientists to conveniently include TDM formats in their existing data pipelines by providing access to both raw data and metadata in terms of native Python objects.
|
||||
|
||||
## Overview
|
||||
|
||||
* [TDM file format](#Dataformat)
|
||||
@ -24,18 +25,18 @@ The [Record Evolution Platform](https://www.record-evolution.de/en/home-en/) use
|
||||
|
||||
## Dataformat
|
||||
|
||||
Datasets encoded in the TDM/TDX format come in pairs comprised of a
|
||||
.tdm (header) file and a .tdx (data) file. While the .tdm file is a human-readable
|
||||
file providing meta information about the dataset, the .tdx file is a binary file
|
||||
Datasets encoded in the TDM/TDX format come along in pairs comprised of a
|
||||
.tdm (header) and a .tdx (data) file. While the .tdm file is a human-readable
|
||||
file providing meta information about the data set, the .tdx is a binary
|
||||
containing the actual data. The .tdm based on the _technical data management_
|
||||
model is an XML file. It describes what data the .tdx file contains and how
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||||
model is an XML file and basically describes what data the .tdx contains and how
|
||||
to read it. The
|
||||
[TDM data model](https://www.ni.com/de-de/support/documentation/supplemental/10/ni-tdm-data-model.html)
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||||
structures the data hierarchically with respect to _file_, _(channel)_ _groups_ and
|
||||
_channels_. The file-level XML may contain any number of (channel) groups, each
|
||||
structures the data hierarchically with respect to _file_, (channel) _groups_ and
|
||||
_channels_. The file level XML may contain any number of (channel) groups each
|
||||
of which is made up of an arbitrary number of channels. Thus, the XML tree in
|
||||
the [TDM header file](https://zone.ni.com/reference/de-XX/help/370858P-0113/tdmdatamodel/tdmdatamodel/tdm_headerfile/)
|
||||
looks like this:
|
||||
looks basically like this:
|
||||
|
||||
```xml
|
||||
<?xml version="1.0" encoding="UTF-8" standalone="no" ?>
|
||||
@ -66,14 +67,14 @@ looks like this:
|
||||
</usi:tdm>
|
||||
```
|
||||
|
||||
The XML tree is comprised of _four_ main XML elements: `usi:documentation`, `usi:model`,
|
||||
and is comprised of _four_ main XML elements: `usi:documentation`, `usi:model`,
|
||||
`usi:include` and `usi:data`. The element `usi:include` references the data file
|
||||
`example.tdx` and reveals one of _two_ possible orderings of the mass data (.tdx):
|
||||
|
||||
1. either _channel-wise_ (`<block>`) - all values of a specific channel follow subsequently
|
||||
1. or _block-wise_ (`<block_bm>`) - all values of a specific measurement time follow subsequently.
|
||||
1. either _channel wise_ (`<block>`) - all values of a specific channel follow subsequently -
|
||||
1. or _block wise_ (`<block_bm>`) - all values of a specific measurement time follow subsequently -
|
||||
|
||||
The supported _numerical data types_ are:
|
||||
ordering. The supported _numerical data types_ are
|
||||
|
||||
| datatype | channel datatype | numeric | value sequence | size | description |
|
||||
|-------------|------------------|---------|-----------------|-------|-------------------------|
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||||
@ -86,10 +87,10 @@ The supported _numerical data types_ are:
|
||||
| eFloat64Usi | DT_DOUBLE | 7 | double_sequence | 8byte | 64 Bit double |
|
||||
| eStringUsi | DT_STRING | 1 | string_sequence | | text |
|
||||
|
||||
The XML element `<usi:data>` is comprised of _five_ different types of
|
||||
The XML element `<usi:data>` is basically comprised of _five_ different types of
|
||||
elements that are `<tdm_root>`, `<tdm_channelgroup>`, `<tdm_channel>`, `<localcolumn>`
|
||||
and `<submatrix>`. The root element `<tdm_root>` describes the general properties
|
||||
of the dataset and lists the _ids_ of all channel groups that belong to
|
||||
of the dataset and lists the _id's_ of all channel groups that belong to
|
||||
the dataset. The element `<tdm_channelgroup>` divides the _channels_ into groups
|
||||
and has a unique _id_ that is referenced by its root element. The `<channels>`
|
||||
element in `<tdm_channelgroup>` lists the unique ids of all channels that belong
|
||||
@ -109,7 +110,7 @@ actual data including its datatype. The remaining element types are
|
||||
</localcolumn>
|
||||
```
|
||||
|
||||
with a unique id, the `<measurement_quantity>` referring to one specific channel,
|
||||
with a unique id, the `<measurement_quantity>` refering to one specific channel,
|
||||
the `<submatrix>` and its id respectively, the type of representation in
|
||||
`<sequence_representation>` - being one of _explicit_, _implicit linear_ or
|
||||
_rawlinear_ - and the `<values>` element, which refers to one _value sequence_,
|
||||
@ -124,121 +125,107 @@ and the element `<submatrix>`
|
||||
</submatrix>
|
||||
```
|
||||
|
||||
that references the channel group in `<measurement>` to which it belongs and provides
|
||||
that references the channel group in `<measurement>` it belongs to and provides
|
||||
the _number of rows_ in the channels listed in `<local_columns>`.
|
||||
|
||||
## Installation
|
||||
|
||||
The library can be used both as a _CLI_-based tool and as a _Python_ module.
|
||||
The library can be used both as a _CLI_ based tool and as a _Python_ module.
|
||||
|
||||
### CLI tool
|
||||
|
||||
To install the CLI tool _TDMtermite_, do
|
||||
To install the CLI tool _tdmreaper_ do
|
||||
|
||||
```Shell
|
||||
make install
|
||||
```
|
||||
|
||||
which uses `/usr/local/bin` as an installation directory. On _macOSX_, please first
|
||||
which uses `/usr/local/bin` as installation directory. On _macOSX_ please first
|
||||
build the binary locally with `make` and install it in your preferred location.
|
||||
|
||||
### Python
|
||||
|
||||
In order to build a _Python module_ from the _C++_ code base, the
|
||||
In order to build a _Python module_ from the _C++_ code base the
|
||||
[Cython](https://cython.readthedocs.io/en/latest/index.html) package must be
|
||||
available. It may be installed via `python3 -m pip install cython` .
|
||||
The [Numpy](https://numpy.org) package is recommended
|
||||
available, which may be installed via `python3 -m pip install cython` .
|
||||
Furthermore, the [Numpy](https://numpy.org) package is recommended to be able
|
||||
to pass arrays of data from the C++ kernel to Python. The _makefile_ provides
|
||||
the target `make cython-requirements` to install all required Python modules.
|
||||
Finally, to build the Python extension _tdm_termite_ locally or install
|
||||
it, the targets `make cython-build` and `make cython-install` are provided.
|
||||
To install the Python module on the system, simply do
|
||||
Finally, to build the Python extension _tdm_reaper_ either locally or install
|
||||
it the targets `make cython-build` and `make cython-install` are provided.
|
||||
Hence, to install the Python module on the system simply do
|
||||
|
||||
```Shell
|
||||
make cython-requirements
|
||||
make cython-install
|
||||
```
|
||||
|
||||
which makes the module available for import by `import tdm_termite` .
|
||||
|
||||
#### Installation with pip
|
||||
|
||||
The package is also available via the [Python Package Index](https://pypi.org) at
|
||||
[TDMtermite](https://pypi.org/project/tdmtermite/). To install the latest version simply do
|
||||
|
||||
```Shell
|
||||
python3 -m pip install tdmtermite
|
||||
```
|
||||
|
||||
##### Unix
|
||||
|
||||
Note, that _python3_setuptools_ and _gcc version >= 10.2.0_ are required to
|
||||
successfully install and use it.
|
||||
that makes the module available to be imported as `import tdm_reaper` .
|
||||
|
||||
## Usage
|
||||
|
||||
### CLI tool
|
||||
|
||||
The usage of the CLI tool is sufficiently clarified by its help message displayed
|
||||
by `tdmtermite --help`. To extract the data decoded in the pair of
|
||||
by `tdmreaper --help`. For instance, to extract the data decoded in the pair of
|
||||
files `samples/SineData.tdm` and `samples/SineData.tdx` into the directory
|
||||
`/home/jack/data/`:
|
||||
|
||||
```Shell
|
||||
tdmtermite samples/SineData.tdm samples/SineData.tdx --output /home/jack/data
|
||||
tdmreaper samples/SineData.tdm samples/SineData.tdx --output /home/jack/data
|
||||
```
|
||||
|
||||
The tool can also be used to list the available objects in the TDM dataset, which
|
||||
are i.a. _channels_, _channelgroups_ and TDX _blocks_. To list
|
||||
are i.a. _channels_, _channelgroups_ and TDX _blocks_. For instance, to list
|
||||
all channels and channelgroups (without writing any file output):
|
||||
|
||||
```Shell
|
||||
tdmtermite samples/SineData.tdm samples/SineData.tdx --listgroups --listchannels
|
||||
tdmreaper samples/SineData.tdm samples/SineData.tdx --listgroups --listchannels
|
||||
```
|
||||
|
||||
The user may also submit a _filenaming rule_ to control the names of the files the
|
||||
channel(group)s are written to. To this end, the _magic flags_ `%G` `%g`, `%C`
|
||||
channel(-group)s are written to. To this end, the _magic flags_ `%G` `%g`, `%C`
|
||||
and `%c` representing the group id, group name, channel index and channel name
|
||||
are defined. The default filenaming option is:
|
||||
are defined. The default filenaming option is
|
||||
|
||||
```Shell
|
||||
tdmtermite samples/SineData.tdm samples/SineData.tdx --output /home/jack/data --filenames channelgroup_%G.csv
|
||||
tdmreaper samples/SineData.tdm samples/SineData.tdx --output /home/jack/data --filenames channelgroup_%G.csv
|
||||
```
|
||||
|
||||
This makes the tool write _all channels_ grouped into files according to their
|
||||
group association, while all channelgroup filenames obey the pattern `channelgroup_%G.csv`,
|
||||
which makes the tool write _all channels_ grouped into files according to their
|
||||
group association, while all channelgroup filenames obey the pattern `channelgroup_%G.csv`
|
||||
with `%G` being replaced by the group id. The filenaming rule also enables the user
|
||||
to extract only a single channel(group) by providing a particular channel(group)
|
||||
to extract only a single channel(group) by providing a particular channel(-group)
|
||||
id in the filenaming flag. For example,
|
||||
|
||||
```Shell
|
||||
tdmtermite samples/SineData.tdm samples/SineData.tdx --output /home/jack/data -f channel_usi16_%c.csv --includemeta
|
||||
tdmreaper samples/SineData.tdm samples/SineData.tdx --output /home/jack/data -f channel_usi16_%c.csv --includemeta
|
||||
```
|
||||
|
||||
This will write the single channel with the id `usi16` to the file
|
||||
`/home/jack/data/channel_usi16_A4.csv`, including its meta-data as a file header.
|
||||
will write the single channel with id `usi16` to the file
|
||||
`/home/jack/data/channel_usi16_A4.csv` including its meta-data as a file header.
|
||||
|
||||
### Python
|
||||
|
||||
To be able to use the Python module _tdm_termite_, it first has to be built locally
|
||||
or installed on the system. In the Python interpreter, simply do:
|
||||
To be able to use the Python module _tdm_reaper_ it first has to be build locally
|
||||
or installed on the system. In the Python interpreter simply do:
|
||||
|
||||
```Python
|
||||
import tdmtermite
|
||||
import tdm_reaper
|
||||
```
|
||||
|
||||
This will import the module. The TDM files are provided by creating an instance of
|
||||
the _tdmtermite_ class:
|
||||
to import the module. The TDM files are provided by creating an instance of
|
||||
the _tdm_reaper_ class:
|
||||
|
||||
```Python
|
||||
# create 'tdmtermite' instance object
|
||||
# create 'tdm_reaper' instance object
|
||||
try :
|
||||
jack = tdmtermite.tdmtermite(b'samples/SineData.tdm',b'samples/SineData.tdx')
|
||||
jack = tdm_reaper.tdmreaper(b'samples/SineData.tdm',b'samples/SineData.tdx')
|
||||
except RuntimeError as e:
|
||||
print("failed to load/decode TDM files: " + str(e))
|
||||
```
|
||||
|
||||
After initializing the _tdmtermite_ object, it can be used to extract any of the
|
||||
After initializing the _tdm_reaper_ object it can be used to extract any of the
|
||||
available data. For instance, to list the included channelgroups and channels:
|
||||
|
||||
```Python
|
||||
@ -250,16 +237,16 @@ grpids = jack.get_channelgroup_ids()
|
||||
chnids = jack.get_channel_ids()
|
||||
```
|
||||
|
||||
As a use case, we have a look at listing the ids of all channelgroups and printing
|
||||
As a use case, we have look at listing the ids of all channelgroups and printing
|
||||
their data to separate files:
|
||||
|
||||
```Python
|
||||
import tdmtermite
|
||||
import tdm_reaper
|
||||
import re
|
||||
|
||||
# create 'tdmtermite' instance object
|
||||
# create 'tdm_reaper' instance object
|
||||
try :
|
||||
jack = tdmtermite.tdmtermite(b'samples/SineData.tdm',b'samples/SineData.tdx')
|
||||
jack = tdm_reaper.tdmreaper(b'samples/SineData.tdm',b'samples/SineData.tdx')
|
||||
except RuntimeError as e :
|
||||
print("failed to load/decode TDM files: " + str(e))
|
||||
|
||||
@ -287,19 +274,19 @@ for grp in grpids :
|
||||
print("failed to print channelgroup: " + str(grp) + " : " + str(e))
|
||||
```
|
||||
|
||||
For details, see this [extensive example](python/usage.py)
|
||||
For a full example including more details see the [extensive example](python/usage.py)
|
||||
and the absolute minimal example [minimal usage](python/minimal.py). In order
|
||||
to simply extract all data of the TDM datatset and dump it to files in a given
|
||||
(existing!) directory, do
|
||||
|
||||
```Python
|
||||
import tdmtermite
|
||||
jack = tdmtermite.tdmtermite(b'samples/SineData.tdm',b'samples/SineData.tdx')
|
||||
import tdm_reaper
|
||||
jack = tdm_reaper.tdmreaper(b'samples/SineData.tdm',b'samples/SineData.tdx')
|
||||
jack.write_all(b"./my_tdm_data_directory/")
|
||||
```
|
||||
|
||||
The interface allows you to construct customized file/column headers from any
|
||||
meta-data and provide these headers for usage in file output (see this
|
||||
The interface allows to construct customized file/column headers from any
|
||||
meta-data and provide these headers for usage in file output (see the
|
||||
[example](python/custom.py)).
|
||||
|
||||
## References
|
||||
@ -321,30 +308,6 @@ meta-data and provide these headers for usage in file output (see this
|
||||
|
||||
### Implementation
|
||||
|
||||
- https://en.cppreference.com/w/
|
||||
- https://pugixml.org/
|
||||
- https://github.com/zeux/pugixml
|
||||
- https://cython.readthedocs.io/en/latest/src/userguide/wrapping_CPlusPlus.html
|
||||
|
||||
### Packaging
|
||||
|
||||
#### Documentation
|
||||
|
||||
- https://packaging.python.org/tutorials/packaging-projects/
|
||||
- https://setuptools.readthedocs.io/en/latest/userguide/declarative_config.html
|
||||
- https://test.pypi.org/account/register/
|
||||
- https://github.com/pypa/auditwheel
|
||||
- https://github.com/pypa/python-manylinux-demo
|
||||
- https://github.com/pypa/manylinux
|
||||
|
||||
#### C/C++ Extensions
|
||||
|
||||
- https://docs.python.org/3/extending/building.html
|
||||
|
||||
#### Articles
|
||||
|
||||
- https://martinsosic.com/development/2016/02/08/wrapping-c-library-as-python-module.html
|
||||
- https://malramsay.com/post/perils-of-packaging/
|
||||
- https://github.com/neuronsimulator/nrn/issues/329
|
||||
- https://levelup.gitconnected.com/how-to-deploy-a-cython-package-to-pypi-8217a6581f09
|
||||
- https://medium.com/swlh/distributing-python-packages-protected-with-cython-40fc29d84caf
|
||||
|
||||
@ -1,55 +0,0 @@
|
||||
|
||||
<html>
|
||||
|
||||
<head>
|
||||
|
||||
<title>TDMtermite</title>
|
||||
<style>
|
||||
</style>
|
||||
|
||||
</head>
|
||||
|
||||
<body>
|
||||
|
||||
<p align="center">
|
||||
<a href="https://github.com/RecordEvolution/TDMtermite.git">
|
||||
<img alt="tdmtermite.svg"
|
||||
src="assets/tdmtermite.svg"
|
||||
width="400"
|
||||
/>
|
||||
</a>
|
||||
</p>
|
||||
|
||||
<div style="width: 100%; display: block; margin-left: 28%; margin-right: 28%;">
|
||||
|
||||
<div style="width: 100%; overflow: hidden;">
|
||||
|
||||
<div style="margin: 5px; float: left;">
|
||||
<a href="https://lgtm.com/projects/g/RecordEvolution/TDMtermite/alerts/">
|
||||
<img alt="Total alerts"
|
||||
src="https://img.shields.io/lgtm/alerts/g/RecordEvolution/TDMtermite.svg?logo=lgtm&logoWidth=18"/>
|
||||
</a>
|
||||
</div>
|
||||
|
||||
<div style="margin: 5px; float: left;">
|
||||
<a href="https://lgtm.com/projects/g/RecordEvolution/TDMtermite/context:cpp">
|
||||
<img alt="Language grade: C/C++"
|
||||
src="https://img.shields.io/lgtm/grade/cpp/g/RecordEvolution/TDMtermite.svg?logo=lgtm&logoWidth=18"/>
|
||||
</a>
|
||||
</div>
|
||||
|
||||
<div style="margin: 5px; float: left;">
|
||||
<a href="https://lgtm.com/projects/g/RecordEvolution/TDMtermite/context:python">
|
||||
<img alt="Language grade: Python"
|
||||
src="https://img.shields.io/lgtm/grade/python/g/RecordEvolution/TDMtermite.svg?logo=lgtm&logoWidth=18"/>
|
||||
</a>
|
||||
</div>
|
||||
|
||||
</div>
|
||||
|
||||
</div>
|
||||
|
||||
</body>
|
||||
|
||||
</html>
|
||||
|
||||
@ -1,100 +0,0 @@
|
||||
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
|
||||
<svg
|
||||
xmlns:dc="http://purl.org/dc/elements/1.1/"
|
||||
xmlns:cc="http://creativecommons.org/ns#"
|
||||
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
|
||||
xmlns:svg="http://www.w3.org/2000/svg"
|
||||
xmlns="http://www.w3.org/2000/svg"
|
||||
xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
|
||||
xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
|
||||
viewBox="0 0 366.72 77.08"
|
||||
version="1.1"
|
||||
id="svg3945"
|
||||
width="366.72"
|
||||
height="77.080002"
|
||||
sodipodi:docname="tdmtermite.svg"
|
||||
inkscape:version="1.0.1 (3bc2e813f5, 2020-09-07)">
|
||||
<sodipodi:namedview
|
||||
pagecolor="#ffffff"
|
||||
bordercolor="#666666"
|
||||
borderopacity="1"
|
||||
objecttolerance="10"
|
||||
gridtolerance="10"
|
||||
guidetolerance="10"
|
||||
inkscape:pageopacity="0"
|
||||
inkscape:pageshadow="2"
|
||||
inkscape:window-width="1920"
|
||||
inkscape:window-height="1168"
|
||||
id="namedview19"
|
||||
showgrid="false"
|
||||
inkscape:zoom="3.8766824"
|
||||
inkscape:cx="199.46638"
|
||||
inkscape:cy="38.540001"
|
||||
inkscape:window-x="2048"
|
||||
inkscape:window-y="0"
|
||||
inkscape:window-maximized="1"
|
||||
inkscape:current-layer="svg3945" />
|
||||
<metadata
|
||||
id="metadata3951">
|
||||
<rdf:RDF>
|
||||
<cc:Work
|
||||
rdf:about="">
|
||||
<dc:format>image/svg+xml</dc:format>
|
||||
<dc:type
|
||||
rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
|
||||
<dc:title>flasher</dc:title>
|
||||
</cc:Work>
|
||||
</rdf:RDF>
|
||||
</metadata>
|
||||
<defs
|
||||
id="defs3949" />
|
||||
<title
|
||||
id="title3916">flasher</title>
|
||||
<g
|
||||
id="logog">
|
||||
<path
|
||||
id="path138"
|
||||
d="m 32.86,2 -13,7.5 v 0 h -0.05 v 0 l -0.48,0.28 c -4.27,2.46 -5.68,11.38 -6.06,14.75 L 36.2,11.33 c 0.39,-0.19 7.6,-3.69 13.57,-3.69 h 0.14 L 40.13,2 a 8.15,8.15 0 0 0 -7.27,0"
|
||||
transform="translate(-2.04,-1.15)"
|
||||
style="fill:#364d5c" />
|
||||
<path
|
||||
id="path142"
|
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d="M 5.68,17.69 A 8.2,8.2 0 0 0 2,24 v 15.78 c 0,4.9 7,10.48 9.75,12.46 V 25.77 c 0,-0.44 0.6,-8.55 3.65,-13.72 z"
|
||||
transform="translate(-2.04,-1.15)"
|
||||
style="fill:#364d5c" />
|
||||
<path
|
||||
id="path146"
|
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d="m 12.1,54.12 v 0 C 11.74,53.88 5,49.41 2,44.24 v 11.14 a 8.2,8.2 0 0 0 3.64,6.3 l 13.5,7.79 c 4.28,2.46 12.7,-0.77 15.81,-2.12 z"
|
||||
transform="translate(-2.04,-1.15)"
|
||||
style="fill:#364d5c" />
|
||||
<path
|
||||
id="path150"
|
||||
d="m 36.79,68 c -0.4,0.19 -7.71,3.75 -13.71,3.69 l 9.78,5.64 a 8.15,8.15 0 0 0 7.27,0 l 13.51,-7.8 c 4.27,-2.46 5.68,-11.39 6.06,-14.75 z"
|
||||
transform="translate(-2.04,-1.15)"
|
||||
style="fill:#364d5c" />
|
||||
<path
|
||||
id="path154"
|
||||
d="M 61.2,27.13 V 53.6 c 0,0.44 -0.6,8.55 -3.65,13.72 l 9.77,-5.64 A 8.2,8.2 0 0 0 71,55.38 V 39.59 c 0,-4.94 -7,-10.5 -9.75,-12.46"
|
||||
transform="translate(-2.04,-1.15)"
|
||||
style="fill:#364d5c" />
|
||||
<path
|
||||
id="path158"
|
||||
d="M 67.31,17.69 53.81,9.9 C 49.53,7.44 41.11,10.67 38,12 l 22.85,13.23 v 0 a 43.43,43.43 0 0 1 5.7,4.51 24,24 0 0 1 4.45,5.35 V 24 a 8.2,8.2 0 0 0 -3.64,-6.3"
|
||||
transform="translate(-2.04,-1.15)"
|
||||
style="fill:#364d5c" />
|
||||
</g>
|
||||
<g
|
||||
id="re" />
|
||||
<text
|
||||
xml:space="preserve"
|
||||
style="font-style:normal;font-weight:normal;font-size:40px;line-height:1.25;font-family:sans-serif;letter-spacing:0px;word-spacing:0px;fill:#364d5c;fill-opacity:1;stroke:none"
|
||||
x="74.101189"
|
||||
y="54.47554"
|
||||
id="text3955"><tspan
|
||||
id="tspan3953"
|
||||
x="74.101189"
|
||||
y="54.47554"
|
||||
style="font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;font-size:44px;font-family:sans-serif;-inkscape-font-specification:'sans-serif, Bold';font-variant-ligatures:normal;font-variant-caps:normal;font-variant-numeric:normal;font-feature-settings:normal;text-align:start;writing-mode:lr-tb;text-anchor:start;fill:#364d5c;fill-opacity:1"><tspan
|
||||
style="font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;font-family:sans-serif;-inkscape-font-specification:'sans-serif Bold'"
|
||||
id="tspan86">TDMtermite</tspan> </tspan></text>
|
||||
</svg>
|
||||
|
Before Width: | Height: | Size: 4.0 KiB |
@ -1,52 +1,51 @@
|
||||
# distutils: language = c++
|
||||
# cython: language_level = 3
|
||||
|
||||
from tdmtermite cimport cpptdmtermite
|
||||
|
||||
from tdm_reaper cimport tdm_reaper
|
||||
import json as jn
|
||||
# import numpy as np
|
||||
|
||||
cdef class tdmtermite:
|
||||
cdef class tdmreaper:
|
||||
|
||||
# C++ instance of class => stack allocated (requires nullary constructor!)
|
||||
cdef cpptdmtermite cpptdm
|
||||
cdef tdm_reaper cpp_tdm
|
||||
|
||||
# constructor
|
||||
def __cinit__(self, string tdmfile, string tdxfile):
|
||||
self.cpptdm = cpptdmtermite(tdmfile,tdxfile)
|
||||
self.cpp_tdm = tdm_reaper(tdmfile,tdxfile)
|
||||
|
||||
# provide TDM files
|
||||
def submit_files(self,string tdmfile, string tdxfile):
|
||||
self.cpptdm.submit_files(tdmfile,tdxfile)
|
||||
self.cpp_tdm.submit_files(tdmfile,tdxfile)
|
||||
|
||||
# get list of channel(-group) ids
|
||||
def get_channelgroup_ids(self):
|
||||
return self.cpptdm.get_channelgroup_ids()
|
||||
return self.cpp_tdm.get_channelgroup_ids()
|
||||
def get_channel_ids(self):
|
||||
return self.cpptdm.get_channel_ids()
|
||||
return self.cpp_tdm.get_channel_ids()
|
||||
|
||||
# get data of specific channel
|
||||
def get_channel(self, string id):
|
||||
return self.cpptdm.get_channel_as_double(id)
|
||||
return self.cpp_tdm.get_channel_as_double(id)
|
||||
|
||||
# get meta-data of channel(-group) (as dictionary)
|
||||
def get_channelgroup_info(self, string id):
|
||||
grpstr = self.cpptdm.get_channelgroup_info(id)
|
||||
grpstr = self.cpp_tdm.get_channelgroup_info(id)
|
||||
return jn.loads(grpstr.decode())
|
||||
def get_channel_info(self, string id):
|
||||
chnstr = self.cpptdm.get_channel_info(id)
|
||||
chnstr = self.cpp_tdm.get_channel_info(id)
|
||||
return jn.loads(chnstr.decode())
|
||||
|
||||
# print a channel(-group)
|
||||
def print_channelgroup(self, string id, const char* filename, bool include_meta,
|
||||
char delimiter, string column_header):
|
||||
self.cpptdm.print_group(id,filename,include_meta,delimiter,column_header)
|
||||
self.cpp_tdm.print_group(id,filename,include_meta,delimiter,column_header)
|
||||
def print_channel(self, string id, const char* filename,
|
||||
bool include_meta):
|
||||
self.cpptdm.print_channel(id,filename,include_meta)
|
||||
self.cpp_tdm.print_channel(id,filename,include_meta)
|
||||
|
||||
# print all data grouped by channelgroups
|
||||
def write_all(self, string outputdir) :
|
||||
grpids = self.cpptdm.get_channelgroup_ids()
|
||||
grpids = self.cpp_tdm.get_channelgroup_ids()
|
||||
for id in grpids :
|
||||
grpfile = outputdir.decode() + "/channelgroup_" + id.decode() + ".csv"
|
||||
self.cpptdm.print_group(id,grpfile.encode(),True,ord(','),"".encode())
|
||||
self.cpp_tdm.print_group(id,grpfile.encode(),True,ord(','),"".encode())
|
||||
1
cython/requirements.txt
Normal file
1
cython/requirements.txt
Normal file
@ -0,0 +1 @@
|
||||
Cython==0.29.21
|
||||
24
cython/setup.py
Normal file
24
cython/setup.py
Normal file
@ -0,0 +1,24 @@
|
||||
from distutils.core import setup
|
||||
from distutils.extension import Extension
|
||||
from Cython.Build import cythonize
|
||||
|
||||
extensions = Extension(
|
||||
name="tdm_reaper",
|
||||
sources=["cython/py_tdm_reaper.pyx"],
|
||||
# libraries=[""],
|
||||
# library_dirs=["lib"],
|
||||
include_dirs=["lib","pugixml"],
|
||||
language='c++',
|
||||
extra_compile_args=['-std=c++17','-Wno-unused-variable'],
|
||||
extra_link_args=['-std=c++17'],
|
||||
)
|
||||
|
||||
setup(
|
||||
version='0.1',
|
||||
description='TDMReaper cython extension',
|
||||
author='Record Evolution GmbH',
|
||||
author_email='mario.fink@record-evolution.de',
|
||||
url='https://github.com/RecordEvolution/tdm_ripper.git',
|
||||
name="tdm_reaper",
|
||||
ext_modules=cythonize(extensions)
|
||||
)
|
||||
@ -1,34 +1,28 @@
|
||||
# cython: language_level = 3
|
||||
|
||||
# use some C++ STL libraries
|
||||
from libcpp.string cimport string
|
||||
from libcpp.vector cimport vector
|
||||
from libcpp cimport bool
|
||||
|
||||
cdef extern from "lib/tdm_termite.cpp":
|
||||
cdef extern from "tdm_reaper.cpp":
|
||||
pass
|
||||
|
||||
cdef extern from "lib/tdm_termite.hpp":
|
||||
|
||||
cdef cppclass cpptdmtermite "tdm_termite":
|
||||
|
||||
cdef extern from "tdm_reaper.hpp":
|
||||
cdef cppclass tdm_reaper:
|
||||
# constructor(s)
|
||||
cpptdmtermite() except +
|
||||
cpptdmtermite(string tdmfile, string tdxfile) except +
|
||||
|
||||
tdm_reaper() except +
|
||||
tdm_reaper(string tdmfile, string tdxfile) except +
|
||||
# provide TDM files
|
||||
void submit_files(string tdmfile, string tdxfile) except+
|
||||
|
||||
# get list of channel(-group) ids
|
||||
vector[string] get_channelgroup_ids() except+
|
||||
vector[string] get_channel_ids() except+
|
||||
|
||||
# get data of specific channel
|
||||
vector[double] get_channel_as_double(string id) except+
|
||||
|
||||
# get meta-data
|
||||
string get_channelgroup_info(string id) except+
|
||||
string get_channel_info(string id) except+
|
||||
|
||||
# print a channel(-group)
|
||||
void print_group(string id, const char* filename, bool include_meta,
|
||||
char delimiter, string column_header) except+
|
||||
@ -14,11 +14,9 @@ typedef unsigned short int eUInt16Usi;
|
||||
typedef unsigned int eUInt32Usi;
|
||||
typedef float eFloat32Usi;
|
||||
typedef double eFloat64Usi;
|
||||
typedef char eStringUsi;
|
||||
|
||||
class tdmdatatype
|
||||
{
|
||||
|
||||
protected:
|
||||
eInt16Usi sint16_; // 0
|
||||
eInt32Usi sint32_; // 1
|
||||
@ -27,13 +25,11 @@ protected:
|
||||
eUInt32Usi uint32_; // 4
|
||||
eFloat32Usi float32_; // 5
|
||||
eFloat64Usi float64_; // 6
|
||||
eStringUsi string_; // 7
|
||||
short int dtidx_; // \in \{0,...,7\}
|
||||
|
||||
short int dtidx_; // \in \{0,...,6\}
|
||||
public:
|
||||
tdmdatatype(): sint16_(0), sint32_(0),
|
||||
uint8_(0), uint16_(0), uint32_(0),
|
||||
float32_(0.0), float64_(0.0), string_(0),
|
||||
float32_(0.0), float64_(0.0),
|
||||
dtidx_(0) { };
|
||||
// every supported datatype gets its own constructor
|
||||
tdmdatatype(eInt16Usi num): sint16_(num), dtidx_(0) {};
|
||||
@ -43,25 +39,10 @@ public:
|
||||
tdmdatatype(eUInt32Usi num): uint32_(num), dtidx_(4) {};
|
||||
tdmdatatype(eFloat32Usi num): float32_(num), dtidx_(5) {};
|
||||
tdmdatatype(eFloat64Usi num): float64_(num), dtidx_(6) {};
|
||||
tdmdatatype(eStringUsi num): string_(num), dtidx_(7) {};
|
||||
|
||||
// identify type
|
||||
short int& dtype() { return dtidx_; }
|
||||
|
||||
// copy constructor
|
||||
tdmdatatype(const tdmdatatype &num)
|
||||
{
|
||||
this->sint16_ = num.sint16_;
|
||||
this->sint32_ = num.sint32_;
|
||||
this->uint8_ = num.uint8_;
|
||||
this->uint16_ = num.uint16_;
|
||||
this->uint32_ = num.uint32_;
|
||||
this->float32_ = num.float32_;
|
||||
this->float64_ = num.float64_;
|
||||
this->string_ = num.string_;
|
||||
this->dtidx_ = num.dtidx_;
|
||||
}
|
||||
|
||||
// overall assignment operator
|
||||
tdmdatatype& operator=(const tdmdatatype &num)
|
||||
{
|
||||
@ -74,8 +55,6 @@ public:
|
||||
this->uint32_ = num.uint32_;
|
||||
this->float32_ = num.float32_;
|
||||
this->float64_ = num.float64_;
|
||||
this->string_ = num.string_;
|
||||
this->dtidx_ = num.dtidx_;
|
||||
}
|
||||
|
||||
return *this;
|
||||
@ -124,12 +103,6 @@ public:
|
||||
this->dtidx_ = 6;
|
||||
return *this;
|
||||
}
|
||||
tdmdatatype& operator=(const eStringUsi &num)
|
||||
{
|
||||
this->string_ = num;
|
||||
this->dtidx_ = 7;
|
||||
return *this;
|
||||
}
|
||||
|
||||
// obtain number as double
|
||||
double as_double()
|
||||
@ -142,7 +115,6 @@ public:
|
||||
else if ( dtidx_ == 4 ) num = (double)uint32_;
|
||||
else if ( dtidx_ == 5 ) num = (double)float32_;
|
||||
else if ( dtidx_ == 6 ) num = (double)float64_;
|
||||
else if ( dtidx_ == 7 ) num = (double)(int)string_;
|
||||
return num;
|
||||
}
|
||||
|
||||
@ -156,7 +128,6 @@ public:
|
||||
else if ( num.dtidx_ == 4 ) out<<num.uint32_;
|
||||
else if ( num.dtidx_ == 5 ) out<<num.float32_;
|
||||
else if ( num.dtidx_ == 6 ) out<<num.float64_;
|
||||
else if ( num.dtidx_ == 7 ) out<<num.string_;
|
||||
return out;
|
||||
}
|
||||
|
||||
@ -345,7 +316,7 @@ const std::vector<tdm_datatype> tdm_datatypes = {
|
||||
{"eFloat32Usi","DT_FLOAT",3,"float_sequence",4,"32 bit float"},
|
||||
{"eFloat64Usi","DT_DOUBLE",7,"double_sequence",8,"64 bit double"},
|
||||
|
||||
{"eStringUsi","DT_STRING",1,"string_sequence",1,"text"}
|
||||
// {"eStringUsi","DT_STRING",1,"string_sequence",0,"text"}
|
||||
|
||||
};
|
||||
|
||||
|
||||
@ -1,79 +1,22 @@
|
||||
// -------------------------------------------------------------------------- //
|
||||
|
||||
#include "tdm_termite.hpp"
|
||||
#include "tdm_reaper.hpp"
|
||||
|
||||
// -------------------------------------------------------------------------- //
|
||||
|
||||
tdm_termite::tdm_termite()
|
||||
tdm_reaper::tdm_reaper()
|
||||
{
|
||||
tdx_ifstream_ = new std::ifstream;
|
||||
|
||||
}
|
||||
|
||||
tdm_termite::tdm_termite(std::string tdmfile, std::string tdxfile, bool showlog):
|
||||
tdm_reaper::tdm_reaper(std::string tdmfile, std::string tdxfile, bool showlog):
|
||||
tdmfile_(tdmfile), tdxfile_(tdxfile)
|
||||
{
|
||||
tdx_ifstream_ = new std::ifstream;
|
||||
|
||||
// start processing tdm data model
|
||||
this->process_tdm(showlog);
|
||||
}
|
||||
|
||||
tdm_termite::~tdm_termite()
|
||||
{
|
||||
// close tdx-file stream and free memory
|
||||
if ( tdx_ifstream_->is_open() ) tdx_ifstream_->close();
|
||||
delete tdx_ifstream_;
|
||||
}
|
||||
|
||||
tdm_termite::tdm_termite(const tdm_termite& other):
|
||||
tdmfile_(other.tdmfile_), tdxfile_(other.tdxfile_), csvfile_(other.csvfile_),
|
||||
endianness_(other.endianness_), machine_endianness_(other.machine_endianness_),
|
||||
meta_data_(other.meta_data_), tdmdt_name_(other.tdmdt_name_),
|
||||
tdmdt_chan_(other.tdmdt_chan_),
|
||||
tdx_blocks_(other.tdx_blocks_), tdmroot_(other.tdmroot_),
|
||||
tdmchannelgroups_(other.tdmchannelgroups_), tdmchannels_(other.tdmchannels_),
|
||||
tdmchannels_data_(other.tdmchannels_data_), submatrices_(other.submatrices_),
|
||||
localcolumns_(other.localcolumns_), tdxbuffer_(other.tdxbuffer_)
|
||||
{
|
||||
tdx_ifstream_ = new std::ifstream;
|
||||
if ( other.tdx_ifstream_->is_open() )
|
||||
{
|
||||
tdx_ifstream_->open(tdxfile_.c_str(),std::ifstream::binary);
|
||||
tdx_ifstream_->seekg(other.tdx_ifstream_->tellg());
|
||||
}
|
||||
}
|
||||
|
||||
tdm_termite& tdm_termite::operator=(const tdm_termite& other)
|
||||
{
|
||||
if ( this != &other )
|
||||
{
|
||||
tdmfile_ = other.tdmfile_;
|
||||
tdxfile_ = other.tdxfile_;
|
||||
csvfile_ = other.csvfile_;
|
||||
endianness_ = other.endianness_;
|
||||
machine_endianness_ = other.machine_endianness_;
|
||||
meta_data_ = other.meta_data_;
|
||||
tdmdt_name_ = other.tdmdt_name_;
|
||||
tdmdt_chan_= other.tdmdt_chan_;
|
||||
tdx_blocks_ = other.tdx_blocks_;
|
||||
tdmroot_ = other.tdmroot_;
|
||||
tdmchannelgroups_ = other.tdmchannelgroups_;
|
||||
tdmchannels_ = other.tdmchannels_;
|
||||
tdmchannels_data_ = other.tdmchannels_data_;
|
||||
submatrices_ = other.submatrices_;
|
||||
localcolumns_ = other.localcolumns_;
|
||||
tdxbuffer_ = other.tdxbuffer_;
|
||||
if ( other.tdx_ifstream_->is_open() )
|
||||
{
|
||||
tdx_ifstream_->open(tdxfile_.c_str(),std::ifstream::binary);
|
||||
tdx_ifstream_->seekg(other.tdx_ifstream_->tellg());
|
||||
}
|
||||
}
|
||||
|
||||
return *this;
|
||||
}
|
||||
|
||||
void tdm_termite::submit_files(std::string tdmfile, std::string tdxfile, bool showlog)
|
||||
void tdm_reaper::submit_files(std::string tdmfile, std::string tdxfile, bool showlog)
|
||||
{
|
||||
// save files
|
||||
tdmfile_ = tdmfile;
|
||||
@ -91,7 +34,7 @@ void tdm_termite::submit_files(std::string tdmfile, std::string tdxfile, bool sh
|
||||
this->process_tdm(showlog);
|
||||
}
|
||||
|
||||
void tdm_termite::process_tdm(bool showlog)
|
||||
void tdm_reaper::process_tdm(bool showlog)
|
||||
{
|
||||
// check both tdm, tdx files
|
||||
std::filesystem::path ptdm(tdmfile_), ptdx(tdxfile_);
|
||||
@ -163,62 +106,37 @@ void tdm_termite::process_tdm(bool showlog)
|
||||
this->process_localcolumns(showlog,xml_doc);
|
||||
|
||||
// open .tdx and stream all binary data into buffer
|
||||
// try {
|
||||
// std::ifstream fin(tdxfile_.c_str(),std::ifstream::binary);
|
||||
// // if ( !fin.good() ) std::cerr<<"failed to open .tdx-file\n";
|
||||
//
|
||||
// std::vector<unsigned char> tdxbuf((std::istreambuf_iterator<char>(fin)),
|
||||
// (std::istreambuf_iterator<char>()));
|
||||
// tdxbuffer_ = tdxbuf;
|
||||
//
|
||||
// if ( showlog ) std::cout<<"size of .tdx buffer (bytes): "<<tdxbuffer_.size()<<"\n\n";
|
||||
//
|
||||
// // close .tdx file
|
||||
// fin.close();
|
||||
// } catch (const std::exception& e ) {
|
||||
// throw std::runtime_error( std::string("failed to open .tdx and stream data to buffer: ")
|
||||
// + e.what() );
|
||||
// }
|
||||
try {
|
||||
tdx_ifstream_->open(tdxfile_.c_str(),std::ifstream::binary);
|
||||
} catch (const std::exception& e) {
|
||||
throw std::runtime_error( std::string("failed to open .tdx file in ifstream: ")
|
||||
std::ifstream fin(tdxfile_.c_str(),std::ifstream::binary);
|
||||
// if ( !fin.good() ) std::cerr<<"failed to open .tdx-file\n";
|
||||
|
||||
std::vector<unsigned char> tdxbuf((std::istreambuf_iterator<char>(fin)),
|
||||
(std::istreambuf_iterator<char>()));
|
||||
tdxbuffer_ = tdxbuf;
|
||||
|
||||
if ( showlog ) std::cout<<"size of .tdx buffer (bytes): "<<tdxbuffer_.size()<<"\n\n";
|
||||
|
||||
// close .tdx file
|
||||
fin.close();
|
||||
} catch (const std::exception& e ) {
|
||||
throw std::runtime_error( std::string("failed to open .tdx and stream data to buffer: ")
|
||||
+ e.what() );
|
||||
}
|
||||
}
|
||||
|
||||
void tdm_termite::process_include(bool showlog, pugi::xml_document& xml_doc)
|
||||
void tdm_reaper::process_include(bool showlog, pugi::xml_document& xml_doc)
|
||||
{
|
||||
// get XML node
|
||||
pugi::xml_node tdmincl = xml_doc.child("usi:tdm").child("usi:include");
|
||||
|
||||
// check endianness
|
||||
std::string endianness(tdmincl.child("file").attribute("byteOrder").value());
|
||||
// endianness_ = endianness.compare("littleEndian") == 0 ? true : false;
|
||||
if ( endianness.compare("littleEndian") == 0 )
|
||||
{
|
||||
endianness_ = true;
|
||||
}
|
||||
else if ( endianness.compare("bigEndian") == 0 )
|
||||
{
|
||||
endianness_ = false;
|
||||
}
|
||||
else
|
||||
{
|
||||
throw std::runtime_error(std::string("unsupported endianness: ") + endianness);
|
||||
}
|
||||
endianness_ = endianness.compare("littleEndian") == 0 ? true : false;
|
||||
|
||||
// obtain machine's endianness
|
||||
machine_endianness_ = this->detect_endianness();
|
||||
// if ( machine_endianness_ != endianness_ )
|
||||
// {
|
||||
// std::stringstream ss;
|
||||
// ss<<"endianness mismatch: "<<"TDM = "<<(endianness_?"little":"big")
|
||||
// <<" , "
|
||||
// <<"Arch = "<<(machine_endianness_?"little":"big");
|
||||
// // std::cout<<ss.str()<<"\n";
|
||||
// // throw std::runtime_error(ss.str());
|
||||
// }
|
||||
int num = 1;
|
||||
machine_endianness_ = ( *(char*)&num == 1 );
|
||||
if ( machine_endianness_ != endianness_ ) throw std::runtime_error("endianness mismatch");
|
||||
|
||||
// list block of massdata
|
||||
for (pugi::xml_node anode: tdmincl.child("file").children())
|
||||
@ -260,7 +178,7 @@ void tdm_termite::process_include(bool showlog, pugi::xml_document& xml_doc)
|
||||
if ( showlog ) std::cout<<"number of blocks: "<<tdx_blocks_.size()<<"\n\n";
|
||||
}
|
||||
|
||||
void tdm_termite::process_root(bool showlog, pugi::xml_document& xml_doc)
|
||||
void tdm_reaper::process_root(bool showlog, pugi::xml_document& xml_doc)
|
||||
{
|
||||
// get XML node
|
||||
pugi::xml_node tdmdataroot = xml_doc.child("usi:tdm").child("usi:data")
|
||||
@ -280,7 +198,7 @@ void tdm_termite::process_root(bool showlog, pugi::xml_document& xml_doc)
|
||||
if ( showlog ) std::cout<<tdmroot_.get_info()<<"\n";
|
||||
}
|
||||
|
||||
void tdm_termite::process_channelgroups(bool showlog, pugi::xml_document& xml_doc)
|
||||
void tdm_reaper::process_channelgroups(bool showlog, pugi::xml_document& xml_doc)
|
||||
{
|
||||
// get XML node <usi:data>
|
||||
pugi::xml_node tdmdata = xml_doc.child("usi:tdm").child("usi:data");
|
||||
@ -318,7 +236,7 @@ void tdm_termite::process_channelgroups(bool showlog, pugi::xml_document& xml_do
|
||||
if ( showlog ) std::cout<<"number of channelgroups: "<<tdmchannelgroups_.size()<<"\n\n";
|
||||
}
|
||||
|
||||
void tdm_termite::process_channels(bool showlog, pugi::xml_document& xml_doc)
|
||||
void tdm_reaper::process_channels(bool showlog, pugi::xml_document& xml_doc)
|
||||
{
|
||||
// get XML node <usi:data>
|
||||
pugi::xml_node tdmdata = xml_doc.child("usi:tdm").child("usi:data");
|
||||
@ -362,7 +280,7 @@ void tdm_termite::process_channels(bool showlog, pugi::xml_document& xml_doc)
|
||||
if ( showlog ) std::cout<<"number of channels: "<<tdmchannels_.size()<<"\n\n";
|
||||
}
|
||||
|
||||
void tdm_termite::process_submatrices(bool showlog, pugi::xml_document& xml_doc)
|
||||
void tdm_reaper::process_submatrices(bool showlog, pugi::xml_document& xml_doc)
|
||||
{
|
||||
// get XML node <usi:data>
|
||||
pugi::xml_node tdmdata = xml_doc.child("usi:tdm").child("usi:data");
|
||||
@ -401,7 +319,7 @@ void tdm_termite::process_submatrices(bool showlog, pugi::xml_document& xml_doc)
|
||||
if ( showlog ) std::cout<<"number of submatrices: "<<submatrices_.size()<<"\n\n";
|
||||
}
|
||||
|
||||
void tdm_termite::process_localcolumns(bool showlog, pugi::xml_document& xml_doc)
|
||||
void tdm_reaper::process_localcolumns(bool showlog, pugi::xml_document& xml_doc)
|
||||
{
|
||||
// get XML node <usi:data>
|
||||
pugi::xml_node tdmdata = xml_doc.child("usi:tdm").child("usi:data");
|
||||
@ -464,14 +382,9 @@ void tdm_termite::process_localcolumns(bool showlog, pugi::xml_document& xml_doc
|
||||
{
|
||||
locc.values_ = vl.at(0);
|
||||
}
|
||||
else if ( vl.size() == 0 )
|
||||
{
|
||||
//std::cerr<<"localcolumn ("<<locc.id_<<","<<locc.name_<<") misses any value-ids"<<"\n";
|
||||
locc.values_ = "none";
|
||||
}
|
||||
else
|
||||
{
|
||||
throw std::logic_error("localcolumn with multiple values id(s)");
|
||||
throw std::logic_error("localcolumn with out/multiple values id(s)");
|
||||
}
|
||||
|
||||
// add external id referring to block in <usi:include>
|
||||
@ -484,7 +397,7 @@ void tdm_termite::process_localcolumns(bool showlog, pugi::xml_document& xml_doc
|
||||
{
|
||||
throw std::runtime_error(std::string("measurement_quantity: ")
|
||||
+ locc.measurement_quantity_
|
||||
+ std::string(" is missing/ambiguous") );
|
||||
+ std::string(" is ambiguous") );
|
||||
}
|
||||
std::string dt = tdmchannels_.at(locc.measurement_quantity_).datatype_;
|
||||
std::string sequence_type;
|
||||
@ -506,10 +419,8 @@ void tdm_termite::process_localcolumns(bool showlog, pugi::xml_document& xml_doc
|
||||
|
||||
if ( locc.external_id_.empty() )
|
||||
{
|
||||
//throw std::logic_error( std::string("no external id found for ")
|
||||
// + sequence_type + std::string(" with ") + locc.values_ );
|
||||
//std::cerr<<"no external id found for "<<sequence_type<<" with "<<locc.values_<<"\n";
|
||||
locc.external_id_ = "none";
|
||||
throw std::logic_error( std::string("no external id found for ")
|
||||
+ sequence_type + std::string(" with ") + locc.values_ );
|
||||
}
|
||||
}
|
||||
|
||||
@ -524,7 +435,7 @@ void tdm_termite::process_localcolumns(bool showlog, pugi::xml_document& xml_doc
|
||||
|
||||
// -------------------------------------------------------------------------- //
|
||||
|
||||
std::string tdm_termite::get_channel_overview(format chformatter)
|
||||
std::string tdm_reaper::get_channel_overview(format chformatter)
|
||||
{
|
||||
// summarize all output in single string
|
||||
std::string channels_summary;
|
||||
@ -534,8 +445,8 @@ std::string tdm_termite::get_channel_overview(format chformatter)
|
||||
|
||||
// compose header
|
||||
chformatter.set_header(true);
|
||||
//tdm_channelgroup grp;
|
||||
//channels_summary += grp.get_info(chformatter);
|
||||
tdm_channelgroup grp;
|
||||
channels_summary += grp.get_info(chformatter);
|
||||
tdm_channel chn;
|
||||
channels_summary += chn.get_info(chformatter);
|
||||
std::string rule; // = std::string("#");
|
||||
@ -552,9 +463,8 @@ std::string tdm_termite::get_channel_overview(format chformatter)
|
||||
it!=tdmchannels_.end(); ++it)
|
||||
{
|
||||
// get corresponding group
|
||||
// tdm_channelgroup grp = tdmchannelgroups_.at(it->second.group_);
|
||||
// channels_summary += grp.get_info(chformatter);
|
||||
|
||||
tdm_channelgroup grp = tdmchannelgroups_.at(it->second.group_);
|
||||
channels_summary += grp.get_info(chformatter);
|
||||
// ...and actual channel
|
||||
channels_summary += it->second.get_info(chformatter);
|
||||
channels_summary += std::string("\n");
|
||||
@ -564,7 +474,7 @@ std::string tdm_termite::get_channel_overview(format chformatter)
|
||||
}
|
||||
|
||||
template<typename tdmelement>
|
||||
std::string tdm_termite::get_overview(format formatter)
|
||||
std::string tdm_reaper::get_overview(format formatter)
|
||||
{
|
||||
// summarize all output in single string
|
||||
std::string summary;
|
||||
@ -590,12 +500,12 @@ std::string tdm_termite::get_overview(format formatter)
|
||||
return summary;
|
||||
}
|
||||
|
||||
template std::string tdm_termite::get_overview<tdm_channelgroup>(format formatter);
|
||||
template std::string tdm_termite::get_overview<submatrix>(format formatter);
|
||||
template std::string tdm_termite::get_overview<localcolumn>(format formatter);
|
||||
template std::string tdm_termite::get_overview<block>(format formatter);
|
||||
template std::string tdm_reaper::get_overview<tdm_channelgroup>(format formatter);
|
||||
template std::string tdm_reaper::get_overview<submatrix>(format formatter);
|
||||
template std::string tdm_reaper::get_overview<localcolumn>(format formatter);
|
||||
template std::string tdm_reaper::get_overview<block>(format formatter);
|
||||
|
||||
void tdm_termite::summarize_member(tdm_channelgroup &chp, std::string& summary, format& formatter)
|
||||
void tdm_reaper::summarize_member(tdm_channelgroup chp, std::string& summary, format& formatter)
|
||||
{
|
||||
for ( std::map<std::string,tdm_channelgroup>::iterator it=this->tdmchannelgroups_.begin();
|
||||
it!=this->tdmchannelgroups_.end(); ++it)
|
||||
@ -605,7 +515,7 @@ void tdm_termite::summarize_member(tdm_channelgroup &chp, std::string& summary,
|
||||
}
|
||||
}
|
||||
|
||||
void tdm_termite::summarize_member(submatrix &sbm, std::string& summary, format& formatter)
|
||||
void tdm_reaper::summarize_member(submatrix sbm, std::string& summary, format& formatter)
|
||||
{
|
||||
for ( std::map<std::string,submatrix>::iterator it=this->submatrices_.begin();
|
||||
it!=this->submatrices_.end(); ++it)
|
||||
@ -615,7 +525,7 @@ void tdm_termite::summarize_member(submatrix &sbm, std::string& summary, format&
|
||||
}
|
||||
}
|
||||
|
||||
void tdm_termite::summarize_member(localcolumn &lcc, std::string& summary, format& formatter)
|
||||
void tdm_reaper::summarize_member(localcolumn lcc, std::string& summary, format& formatter)
|
||||
{
|
||||
for ( std::map<std::string,localcolumn>::iterator it=this->localcolumns_.begin();
|
||||
it!=this->localcolumns_.end(); ++it)
|
||||
@ -625,7 +535,7 @@ void tdm_termite::summarize_member(localcolumn &lcc, std::string& summary, forma
|
||||
}
|
||||
}
|
||||
|
||||
void tdm_termite::summarize_member(block &blk, std::string& summary, format& formatter)
|
||||
void tdm_reaper::summarize_member(block blk, std::string& summary, format& formatter)
|
||||
{
|
||||
for ( std::map<std::string,block>::iterator it=this->tdx_blocks_.begin();
|
||||
it!=this->tdx_blocks_.end(); ++it)
|
||||
@ -638,7 +548,7 @@ void tdm_termite::summarize_member(block &blk, std::string& summary, format& for
|
||||
// -------------------------------------------------------------------------- //
|
||||
|
||||
// extract channel by id
|
||||
std::vector<tdmdatatype> tdm_termite::get_channel(std::string& id)
|
||||
std::vector<tdmdatatype> tdm_reaper::get_channel(std::string& id)
|
||||
{
|
||||
// check for existence of required channel id (=key)
|
||||
if ( tdmchannels_.count(id) == 1 )
|
||||
@ -646,7 +556,7 @@ std::vector<tdmdatatype> tdm_termite::get_channel(std::string& id)
|
||||
// retrieve full channel info
|
||||
tdm_channel chn = tdmchannels_.at(id);
|
||||
|
||||
// extract (first) "localcolumn" for channel TODO there should only be a single!! local_column!!
|
||||
// extract (first) "localcolumn" for channel
|
||||
if ( chn.local_columns_.size() != 1 )
|
||||
{
|
||||
throw std::runtime_error(std::string("invalid local_columns_ of channel: ") + id);
|
||||
@ -663,28 +573,8 @@ std::vector<tdmdatatype> tdm_termite::get_channel(std::string& id)
|
||||
}
|
||||
|
||||
// use "values" id to map to external block
|
||||
if ( loccol.external_id_ == "none" )
|
||||
{
|
||||
//throw std::runtime_error(std::string("missing external_id in local_column ")+loccol.id_);
|
||||
//std::cerr<<"missing external_id in local_column "<<loccol.id_<<"\n";
|
||||
return std::vector<tdmdatatype>(0);
|
||||
}
|
||||
block blk = tdx_blocks_.at(loccol.external_id_);
|
||||
|
||||
// find corresponding submatrix
|
||||
if ( submatrices_.count(loccol.submatrix_) != 1 )
|
||||
{
|
||||
throw std::runtime_error(std::string("no associated submatrix for localcolumn found: ") + loccol.id_);
|
||||
}
|
||||
submatrix subm = submatrices_.at(loccol.submatrix_);
|
||||
if ( subm.number_of_rows_ != blk.length_ )
|
||||
{
|
||||
std::stringstream ss;
|
||||
ss<<"number of rows in submatrix "<<subm.id_<<" ("<<subm.number_of_rows_<<") "
|
||||
<<" does not agree with length of associated block "<<blk.id_<<" ("<<blk.length_<<")";
|
||||
throw std::runtime_error(ss.str());
|
||||
}
|
||||
|
||||
// declare vector of appropriate length
|
||||
std::vector<tdmdatatype> datavec(blk.length_);
|
||||
|
||||
@ -694,20 +584,10 @@ std::vector<tdmdatatype> tdm_termite::get_channel(std::string& id)
|
||||
// declare buffer covering the required range of "tdxbuffer_"
|
||||
// (consider both channel-wise and block-wise ordering)
|
||||
unsigned long int strtidx = blk.block_offset_*blk.block_size_
|
||||
+ blk.byte_offset_;
|
||||
// fnshidx = strtidx + blk.length_*dtyp.size_;
|
||||
// std::vector<unsigned char> tdxblk( tdxbuffer_.begin()+strtidx,
|
||||
// tdxbuffer_.begin()+fnshidx );
|
||||
char* blkbuf = new char[blk.length_*dtyp.size_];
|
||||
try {
|
||||
tdx_ifstream_->seekg(strtidx);
|
||||
tdx_ifstream_->read(blkbuf,blk.length_*dtyp.size_);
|
||||
} catch (const std::exception& e) {
|
||||
throw std::runtime_error( std::string("failed to read block from tdx_ifstream_: ")
|
||||
+ e.what() );
|
||||
}
|
||||
std::vector<unsigned char> tdxblk(blkbuf,blkbuf+blk.length_*dtyp.size_);
|
||||
delete []blkbuf;
|
||||
+ blk.byte_offset_,
|
||||
fnshidx = strtidx + blk.length_*dtyp.size_;
|
||||
std::vector<unsigned char> tdxblk( tdxbuffer_.begin()+strtidx,
|
||||
tdxbuffer_.begin()+fnshidx );
|
||||
|
||||
// distinguish numeric datatypes included in "tdmdatatype"
|
||||
if ( blk.value_type_ == std::string("eInt16Usi") )
|
||||
@ -738,10 +618,6 @@ std::vector<tdmdatatype> tdm_termite::get_channel(std::string& id)
|
||||
{
|
||||
this->convert_data_to_type<eFloat64Usi>(tdxblk,datavec);
|
||||
}
|
||||
else if ( blk.value_type_ == std::string("eStringUsi") )
|
||||
{
|
||||
this->convert_data_to_type<eStringUsi>(tdxblk,datavec);
|
||||
}
|
||||
else
|
||||
{
|
||||
throw std::runtime_error(std::string("unsupported/unknown datatype") + blk.value_type_);
|
||||
@ -777,7 +653,7 @@ std::vector<tdmdatatype> tdm_termite::get_channel(std::string& id)
|
||||
|
||||
// -------------------------------------------------------------------------- //
|
||||
|
||||
void tdm_termite::print_channel(std::string &id, const char* filename, bool include_meta)
|
||||
void tdm_reaper::print_channel(std::string &id, const char* filename, bool include_meta)
|
||||
{
|
||||
// check required path
|
||||
this->check_filename_path(filename);
|
||||
@ -822,7 +698,7 @@ void tdm_termite::print_channel(std::string &id, const char* filename, bool incl
|
||||
}
|
||||
}
|
||||
|
||||
void tdm_termite::print_group(std::string &id, const char* filename, bool include_meta,
|
||||
void tdm_reaper::print_group(std::string &id, const char* filename, bool include_meta,
|
||||
char sep, std::string column_header)
|
||||
{
|
||||
// check required path
|
||||
@ -903,7 +779,7 @@ void tdm_termite::print_group(std::string &id, const char* filename, bool includ
|
||||
for ( std::string chn: chngrp.channels_ )
|
||||
{
|
||||
std::vector<tdmdatatype> chndat = this->get_channel(chn);
|
||||
if ( chndat.size() > maxrows ) maxrows = (unsigned int)chndat.size();
|
||||
if ( chndat.size() > maxrows ) maxrows = chndat.size();
|
||||
allchns.push_back(chndat);
|
||||
}
|
||||
|
||||
@ -958,7 +834,7 @@ void tdm_termite::print_group(std::string &id, const char* filename, bool includ
|
||||
}
|
||||
}
|
||||
|
||||
void tdm_termite::check_filename_path(const char* filename)
|
||||
void tdm_reaper::check_filename_path(const char* filename)
|
||||
{
|
||||
// declare filesystem path instance from filename
|
||||
std::filesystem::path pt(filename);
|
||||
@ -968,13 +844,13 @@ void tdm_termite::check_filename_path(const char* filename)
|
||||
|
||||
if ( !std::filesystem::is_directory(pt) )
|
||||
{
|
||||
throw std::runtime_error( std::string("directory does not exist: ") + pt.u8string() );
|
||||
throw std::runtime_error(std::string("directory does not exist: ") + pt.c_str() );
|
||||
}
|
||||
}
|
||||
|
||||
// -------------------------------------------------------------------------- //
|
||||
|
||||
void tdm_termite::check_local_datatypes()
|
||||
void tdm_reaper::check_local_datatypes()
|
||||
{
|
||||
std::cout<<"\nmachine's C++ datatypes:\n";
|
||||
std::cout<<std::setw(25)<<std::left<<"char:"
|
||||
@ -1005,7 +881,7 @@ void tdm_termite::check_local_datatypes()
|
||||
<<std::setw(5)<<std::left<<sizeof(long double)<<"byte(s)\n\n";
|
||||
}
|
||||
|
||||
void tdm_termite::check_datatype_consistency()
|
||||
void tdm_reaper::check_datatype_consistency()
|
||||
{
|
||||
// check datatype consistency, i.e. "local" representation of datatypes
|
||||
for ( tdm_datatype el: tdm_datatypes )
|
||||
@ -1038,10 +914,6 @@ void tdm_termite::check_datatype_consistency()
|
||||
{
|
||||
if ( el.size_ != sizeof(eFloat64Usi) ) throw std::logic_error("invalid representation of eFloat64Usi");
|
||||
}
|
||||
else if ( el.name_ == "eStringUsi" )
|
||||
{
|
||||
if ( el.size_ != sizeof(eStringUsi) ) throw std::logic_error("invalid representation of eStringUsi");
|
||||
}
|
||||
else
|
||||
{
|
||||
throw std::logic_error("missing datatype validation");
|
||||
@ -1052,7 +924,7 @@ void tdm_termite::check_datatype_consistency()
|
||||
// -------------------------------------------------------------------------- //
|
||||
|
||||
template<typename datatype>
|
||||
void tdm_termite::convert_data_to_type(std::vector<unsigned char> &buffer,
|
||||
void tdm_reaper::convert_data_to_type(std::vector<unsigned char> &buffer,
|
||||
std::vector<tdmdatatype> &channel)
|
||||
{
|
||||
// check number of elements of type "datatype" in buffer
|
||||
@ -1070,17 +942,9 @@ void tdm_termite::convert_data_to_type(std::vector<unsigned char> &buffer,
|
||||
uint8_t* dfcast = reinterpret_cast<uint8_t*>(&df);
|
||||
|
||||
for ( unsigned long int j = 0; j < sizeof(datatype); j++ )
|
||||
{
|
||||
// matching byte order between TDM/TDX and machine's architecture ?
|
||||
if ( machine_endianness_ == endianness_ )
|
||||
{
|
||||
dfcast[j] = (int)buffer[i*sizeof(datatype)+j];
|
||||
}
|
||||
else
|
||||
{
|
||||
dfcast[j] = (int)buffer[(i+1)*sizeof(datatype)-(j+1)];
|
||||
}
|
||||
}
|
||||
|
||||
// save number in channel
|
||||
channel[i] = df;
|
||||
@ -1,7 +1,7 @@
|
||||
// ------------------------------------------------------------------------- //
|
||||
|
||||
#ifndef TDM_TERMITE
|
||||
#define TDM_TERMITE
|
||||
#ifndef TDM_REAPER
|
||||
#define TDM_REAPER
|
||||
|
||||
#include <iostream>
|
||||
#include <fstream>
|
||||
@ -24,7 +24,7 @@
|
||||
|
||||
// -------------------------------------------------------------------------- //
|
||||
|
||||
class tdm_termite
|
||||
class tdm_reaper
|
||||
{
|
||||
// .tdm and .tdx paths/filenames
|
||||
std::string tdmfile_;
|
||||
@ -60,32 +60,8 @@ class tdm_termite
|
||||
std::map<std::string,submatrix> submatrices_;
|
||||
std::map<std::string,localcolumn> localcolumns_;
|
||||
|
||||
// binary data container/file stream
|
||||
// binary data container
|
||||
std::vector<unsigned char> tdxbuffer_;
|
||||
std::ifstream *tdx_ifstream_;
|
||||
|
||||
// find machine's endianness at runtime
|
||||
// detect machine endianness (C++20 !!)
|
||||
// if ( std::endian::native == std::endian::little )
|
||||
// {
|
||||
// machine_endianness_ = true;
|
||||
// }
|
||||
// else if ( std::endian::native == std::endian::big )
|
||||
// {
|
||||
// machine_endianness_ = false;
|
||||
// }
|
||||
// else
|
||||
// {
|
||||
// throw std::runtime_error("mixed endianness architecture is not supported");
|
||||
// }
|
||||
bool detect_endianness()
|
||||
{
|
||||
// int num = 1;
|
||||
// machine_endianness_ = ( *(char*)&num == 1 );
|
||||
std::uint32_t num = 0x11223344;
|
||||
uint8_t* dfc = reinterpret_cast<uint8_t*>(&num);
|
||||
return ( dfc[0] == 0x44 );
|
||||
}
|
||||
|
||||
// extract list of identifiers from e.g. "#xpointer(id("usi12") id("usi13"))"
|
||||
std::vector<std::string> extract_ids(std::string idstring)
|
||||
@ -139,15 +115,12 @@ class tdm_termite
|
||||
public:
|
||||
|
||||
// encoding
|
||||
// tdm_termite(std::vector<std::string> csvfile);
|
||||
// tdm_reaper(std::vector<std::string> csvfile);
|
||||
|
||||
// decoding
|
||||
tdm_termite();
|
||||
tdm_termite(std::string tdmfile, std::string tdxfile = std::string(""),
|
||||
tdm_reaper();
|
||||
tdm_reaper(std::string tdmfile, std::string tdxfile = std::string(""),
|
||||
bool showlog = false);
|
||||
~tdm_termite();
|
||||
tdm_termite(const tdm_termite& other);
|
||||
tdm_termite& operator=(const tdm_termite& other);
|
||||
|
||||
// provide (tdm,tdx) files
|
||||
void submit_files(std::string tdmfile, std::string tdxfile = std::string(""),
|
||||
@ -207,10 +180,10 @@ public:
|
||||
template<typename tdmelement>
|
||||
std::string get_overview(format formatter);
|
||||
private:
|
||||
void summarize_member(tdm_channelgroup &chp, std::string& summary, format& formatter);
|
||||
void summarize_member(submatrix &sbm, std::string& summary, format& formatter);
|
||||
void summarize_member(localcolumn &lcc, std::string& summary, format& formatter);
|
||||
void summarize_member(block &blk, std::string& summary, format& formatter);
|
||||
void summarize_member(tdm_channelgroup chp, std::string& summary, format& formatter);
|
||||
void summarize_member(submatrix sbm, std::string& summary, format& formatter);
|
||||
void summarize_member(localcolumn lcc, std::string& summary, format& formatter);
|
||||
void summarize_member(block blk, std::string& summary, format& formatter);
|
||||
public:
|
||||
|
||||
// get list of channelgroup ids
|
||||
132
makefile
132
makefile
@ -1,108 +1,62 @@
|
||||
# --------------------------------------------------------------------------- #
|
||||
|
||||
SHELL := /bin/bash
|
||||
|
||||
# declare name of executable
|
||||
EXE = tdmtermite
|
||||
EXE = tdmreaper
|
||||
|
||||
# sources and headers
|
||||
SRC := tdm_termite
|
||||
SRC := tdm_reaper
|
||||
HPP = $(wildcard lib/*.hpp)
|
||||
|
||||
# compiler and C++ standard
|
||||
CC = g++ -std=c++17
|
||||
|
||||
# compiler options and optimization flags
|
||||
OPT = -O3 -Wall -Wconversion -Wpedantic -Wunused-variable -Wsign-compare
|
||||
OPT = -O3 -Wall -Werror -Wunused-variable -Wsign-compare
|
||||
|
||||
# include 3rd party libraries paths
|
||||
LIBB := 3rdparty/
|
||||
LIB := $(foreach dir,$(shell ls $(LIBB)),-I $(LIBB)$(dir))
|
||||
# include library path
|
||||
LIB = pugixml/
|
||||
|
||||
# determine git version/commit tag
|
||||
GTAG := $(shell git tag -l --sort=version:refname | tail -n1 | sed "s/$^v//g")
|
||||
GTAG := $(shell git tag | tail -n1)
|
||||
GHSH := $(shell git rev-parse HEAD | head -c8)
|
||||
GVSN := $(shell cat python/VERSION | tr -d ' \n')
|
||||
|
||||
# current timestamp
|
||||
TMS = $(shell date +%Y%m%dT%H%M%S)
|
||||
|
||||
# define install location
|
||||
INST := /usr/local/bin
|
||||
|
||||
# platform and current working directory
|
||||
# platform
|
||||
OST := $(shell uname)
|
||||
CWD := $(shell pwd)
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# C++ and CLI tool
|
||||
# CLI tool
|
||||
|
||||
# check tags and build executable
|
||||
exec: check-tags $(GVSN) $(EXE)
|
||||
|
||||
# build executable
|
||||
$(EXE): $(SRC).o main.o
|
||||
$(EXE) : main.o $(SRC).o
|
||||
$(CC) $(OPT) $^ -o $@
|
||||
|
||||
$(SRC).o : lib/$(SRC).cpp lib/$(SRC).hpp $(HPP)
|
||||
$(CC) -c $(OPT) $(LIB) $< -o $@
|
||||
|
||||
# build main.cpp object file and include git version/commit tag
|
||||
main.o: src/main.cpp lib/$(SRC).hpp $(HPP)
|
||||
@cp $< $<.cpp
|
||||
@if [ $(OST) = "Linux" ]; then\
|
||||
sed -i 's/TAGSTRING/$(GTAG)/g' $<.cpp; \
|
||||
sed -i 's/HASHSTRING/$(GHSH)/g' $<.cpp; \
|
||||
sed -i 's/TIMESTAMPSTRING/$(TMS)/g' $<.cpp; \
|
||||
fi
|
||||
@if [ $(OST) = "Darwin" ]; then\
|
||||
sed -i '' 's/TAGSTRING/$(GTAG)/g' $<.cpp; \
|
||||
sed -i '' 's/HASHSTRING/$(GHSH)/g' $<.cpp; \
|
||||
sed -i '' 's/TIMESTAMPSTRING/$(TMS)/g' $<.cpp; \
|
||||
fi
|
||||
$(CC) -c $(OPT) $(LIB) -I lib/ $<.cpp -o $@
|
||||
@rm $<.cpp
|
||||
|
||||
install: $(EXE)
|
||||
install : $(EXE)
|
||||
cp $< $(INST)/
|
||||
|
||||
uninstall : $(INST)/$(EXE)
|
||||
rm $<
|
||||
|
||||
tdmtest : tdmtest.o
|
||||
$(CC) $(OPT) $^ -o $@
|
||||
# build main.cpp object file and include git version/commit tag
|
||||
main.o : src/main.cpp lib/$(SRC).hpp $(HPP)
|
||||
@cp $< $<.cpp
|
||||
@if [ $(OST) = "Linux" ]; then\
|
||||
sed -i 's/TAGSTRING/$(GTAG)/g' $<.cpp; \
|
||||
sed -i 's/HASHSTRING/$(GHSH)/g' $<.cpp; \
|
||||
fi
|
||||
@if [ $(OST) = "Darwin" ]; then\
|
||||
sed -i '' 's/TAGSTRING/$(GTAG)/g' $<.cpp; \
|
||||
sed -i '' 's/HASHSTRING/$(GHSH)/g' $<.cpp; \
|
||||
fi
|
||||
$(CC) -c $(OPT) -I $(LIB) -I lib/ $<.cpp -o $@
|
||||
@rm $<.cpp
|
||||
|
||||
tdmtest.o : src/test.cpp lib/$(SRC).hpp $(HPP)
|
||||
$(CC) -c $(OPT) $(LIB) -I lib/ $< -o $@
|
||||
$(SRC).o : lib/$(SRC).cpp lib/$(SRC).hpp $(HPP)
|
||||
$(CC) -c $(OPT) -I $(LIB) $< -o $@
|
||||
|
||||
cpp-clean :
|
||||
rm -vf $(EXE)
|
||||
rm -vf *.o src/main.cpp.cpp tdmtest
|
||||
|
||||
#-----------------------------------------------------------------------------#
|
||||
# versions
|
||||
|
||||
$(GTAG):
|
||||
@echo "consistent versions check successful: building $(GTAG)"
|
||||
|
||||
check-tags:
|
||||
@echo "latest git tag: $(GTAG)"
|
||||
@echo "latest git hash: $(GHSH)"
|
||||
@echo "python version: $(GVSN)"
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# docker
|
||||
|
||||
docker-build:
|
||||
docker build . --tag tdmtermite:latest
|
||||
|
||||
docker-run:
|
||||
mkdir -pv data/{input,output}
|
||||
docker run -it --rm --volume $(CWD)/data:/home/data tdmtermite:latest /bin/bash
|
||||
|
||||
docker-clean:
|
||||
rm -rv data
|
||||
docker image remove tdmtermite
|
||||
clean-cpp :
|
||||
rm -f $(EXE) *.o src/main.cpp.cpp
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# check process
|
||||
@ -112,25 +66,31 @@ checkps :
|
||||
@ps aux | grep $(EXE) | grep -v "grep"
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# python
|
||||
# python/cython module
|
||||
|
||||
python-build: check-tags $(GVSN)
|
||||
make -C python/ build-inplace
|
||||
cp python/TDMtermite*.so ./ -v
|
||||
cython-requirements: cython/requirements.txt
|
||||
python3 -m pip install -r $<
|
||||
|
||||
python-install: check-tags $(GVSN)
|
||||
make -C python/ install
|
||||
cython-help : cython/setup.py
|
||||
python3 $< --help
|
||||
|
||||
python-clean:
|
||||
make -C python/ clean
|
||||
rm -vf TDMtermite*.so
|
||||
cython-list : cython/setup.py
|
||||
python3 $< --name --description --author --author-email --url
|
||||
|
||||
python-test:
|
||||
PYTHONPATH=./ python python/examples/usage.py
|
||||
cython-build : cython/setup.py cython/tdm_reaper.pxd cython/py_tdm_reaper.pyx $(HPP) lib/tdm_reaper.cpp
|
||||
python3 $< build_ext --inplace
|
||||
cp -v tdm_reaper.cpython-*.so python/
|
||||
|
||||
cython-install : cython/setup.py cython/tdm_reaper.pxd cython/py_tdm_reaper.pyx $(HPP) lib/tdm_reaper.cpp
|
||||
python3 $< install
|
||||
|
||||
clean-cython :
|
||||
rm -vf cython/py_tdm_reaper.cpp
|
||||
rm -vf tdm_reaper.cpython-*.so python/tdm_reaper.cpython-*.so
|
||||
rm -rf build
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
# clean
|
||||
|
||||
clean : cpp-clean python-clean
|
||||
clean : clean-cpp clean-cython
|
||||
|
||||
# --------------------------------------------------------------------------- #
|
||||
|
||||
@ -1,4 +0,0 @@
|
||||
include lib/*.hpp
|
||||
include *.cpp
|
||||
include *.pyx
|
||||
include *.pxd
|
||||
@ -1 +0,0 @@
|
||||
2.1.3
|
||||
@ -1,11 +1,11 @@
|
||||
|
||||
import tdmtermite
|
||||
import tdm_reaper
|
||||
import json
|
||||
import re
|
||||
|
||||
# create 'tdm_termite' instance object
|
||||
# create 'tdm_reaper' instance object
|
||||
try :
|
||||
jack = tdmtermite.tdmtermite(b'samples/SineData.tdm',b'samples/SineData.tdx')
|
||||
jack = tdm_reaper.tdmreaper(b'samples/SineData.tdm',b'samples/SineData.tdx')
|
||||
except RuntimeError as e :
|
||||
print("failed to load/decode TDM files: " + str(e))
|
||||
|
||||
@ -1,60 +0,0 @@
|
||||
|
||||
setup:
|
||||
cat ../README.md | grep '^# TDMtermite' -A 50000 > ./README.md
|
||||
#pandoc -f markdown -t rst -o README.rst README.md
|
||||
#python -m rstvalidator README.rst
|
||||
cp -r ../lib ./
|
||||
cp -r ../3rdparty ./
|
||||
cp -v ../LICENSE ./
|
||||
|
||||
setup-clean:
|
||||
rm -vf README.md README.rst LICENSE
|
||||
rm -rf lib/ 3rdparty/
|
||||
|
||||
build: setup
|
||||
python setup.py build
|
||||
|
||||
build-inplace: setup
|
||||
python setup.py build_ext --inplace
|
||||
|
||||
build-install: setup
|
||||
python setup.py install
|
||||
|
||||
build-sdist: setup
|
||||
python setup.py sdist
|
||||
python -m twine check dist/*
|
||||
|
||||
build-bdist: setup
|
||||
python setup.py bdist
|
||||
python -m twine check dist/*
|
||||
|
||||
build-clean:
|
||||
python setup.py clean --all
|
||||
rm -vf tdmtermite*.so tdmtermite*.cpp
|
||||
rm -rvf dist/ tdmtermite.egg-info/
|
||||
|
||||
cibuildwheel-build: setup
|
||||
cibuildwheel --platform linux
|
||||
|
||||
cibuildwheel-clean:
|
||||
rm -rvf wheelhouse/
|
||||
|
||||
pypi-audit:
|
||||
auditwheel repair $(shell find dist/ -name "*-linux_x86_64.whl")
|
||||
|
||||
# username: __token__
|
||||
# password: API-token including "pypi-"
|
||||
pypi-upload-test:
|
||||
python -m twine upload --repository testpypi dist/$(shell ls -t dist/ | head -n1)
|
||||
|
||||
pypi-install-test:
|
||||
python -m pip install --index-url https://test.pypi.org/simple --no-deps TDMtermite-RecordEvolution
|
||||
# python3 -m pip install -i https://test.pypi.org/simple/ TDMtermite-RecordEvolution==0.5
|
||||
|
||||
pypi-upload:
|
||||
python -m twine upload dist/$(shell ls -t dist/ | head -n1)
|
||||
|
||||
clean: setup build-clean cibuildwheel-clean setup-clean
|
||||
|
||||
run-example:
|
||||
PYTHONPATH=$(pwd) python examples/usage.py
|
||||
@ -1,9 +1,9 @@
|
||||
|
||||
import tdmtermite
|
||||
import tdm_reaper
|
||||
|
||||
# create 'tdm_termite' instance object
|
||||
# create 'tdm_reaper' instance object
|
||||
try :
|
||||
jack = tdmtermite.tdmtermite(b'samples/SineData.tdm',b'samples/SineData.tdx')
|
||||
jack = tdm_reaper.tdmreaper(b'samples/SineData.tdm',b'samples/SineData.tdx')
|
||||
# list ids of channelgroups
|
||||
grpids = jack.get_channelgroup_ids()
|
||||
# iterate through groups
|
||||
@ -1,6 +0,0 @@
|
||||
[build-system]
|
||||
requires = ["setuptools", "wheel","Cython"]
|
||||
build-backend = "setuptools.build_meta"
|
||||
|
||||
[tool.cibuildwheel]
|
||||
before-all = ""
|
||||
@ -1,23 +0,0 @@
|
||||
|
||||
[metadata]
|
||||
name = tdmtermite
|
||||
description = Extract and read data from National Instruments LabVIEW tdx/tdm files and export them as csv files
|
||||
long_description = file: README.md
|
||||
# long_description_content_type = text/x-rst
|
||||
long_description_content_type = text/markdown
|
||||
version = file: VERSION
|
||||
author = Record Evolution GmbH
|
||||
author_email = mario.fink@record-evolution.de
|
||||
maintainer = Record Evolution GmbH
|
||||
url= https://github.com/RecordEvolution/TDMtermite.git
|
||||
license = MIT License
|
||||
license_files = LICENSE
|
||||
keywords = TDM, TDX, National Instruments, DIAdem, LabVIEW, Measurement Studio, SignalExpress
|
||||
classifiers =
|
||||
Programming Language :: Python :: 3
|
||||
License :: OSI Approved :: MIT License
|
||||
Operating System :: OS Independent
|
||||
Topic :: Scientific/Engineering
|
||||
Topic :: Software Development :: Libraries :: Python Modules
|
||||
|
||||
[options]
|
||||
@ -1,23 +0,0 @@
|
||||
from setuptools import Extension, setup
|
||||
from Cython.Build import cythonize
|
||||
import sys
|
||||
|
||||
print("building on platform: "+sys.platform)
|
||||
|
||||
cmpArgs = {
|
||||
"linux": ['-std=c++17','-Wno-unused-variable'],
|
||||
"darwin": ['-std=c++17','-Wno-unused-variable'],
|
||||
"win32": ['/EHsc','/std:c++17']
|
||||
}
|
||||
|
||||
extension = Extension(
|
||||
"tdmtermite",
|
||||
language='c++',
|
||||
sources=["tdmtermite.pyx"],
|
||||
include_dirs=["lib","3rdparty/pugixml"],
|
||||
extra_compile_args=cmpArgs[sys.platform]
|
||||
)
|
||||
|
||||
setup(
|
||||
ext_modules=cythonize(extension,language_level=3)
|
||||
)
|
||||
@ -1,12 +1,12 @@
|
||||
|
||||
import tdmtermite
|
||||
import tdm_reaper
|
||||
# import numpy as np
|
||||
import json
|
||||
import re
|
||||
|
||||
# create 'tdm_termite' instance object
|
||||
# create 'tdm_reaper' instance object
|
||||
try :
|
||||
jack = tdmtermite.tdmtermite(b'samples/SineData.tdm',b'samples/SineData.tdx')
|
||||
jack = tdm_reaper.tdmreaper(b'samples/SineData.tdm',b'samples/SineData.tdx')
|
||||
except RuntimeError as e :
|
||||
print("failed to load/decode TDM files: " + str(e))
|
||||
|
||||
@ -1,369 +0,0 @@
|
||||
<?xml version="1.0" encoding="UTF-8" standalone="no" ?>
|
||||
<usi:tdm xmlns:usi="http://www.ni.com/Schemas/USI/1_0" version="1.0">
|
||||
|
||||
<usi:documentation>
|
||||
<usi:exporter>National Instruments USI</usi:exporter>
|
||||
<usi:exporterVersion>1.5</usi:exporterVersion>
|
||||
</usi:documentation>
|
||||
|
||||
<usi:model modelName="National Instruments USI generated meta file" modelVersion="1.0">
|
||||
<usi:include nsUri="http://www.ni.com/DataModels/USI/TDM/1_0"/>
|
||||
</usi:model>
|
||||
|
||||
<usi:include>
|
||||
<file byteOrder="bigEndian" url="SineData-be.tdx">
|
||||
<block byteOffset="0" id="inc0" length="1000" valueType="eFloat64Usi"/>
|
||||
<block byteOffset="8000" id="inc1" length="1000" valueType="eFloat64Usi"/>
|
||||
<block byteOffset="16000" id="inc2" length="1000" valueType="eFloat64Usi"/>
|
||||
<block byteOffset="24000" id="inc3" length="1000" valueType="eFloat64Usi"/>
|
||||
<block byteOffset="32000" id="inc4" length="1000" valueType="eFloat64Usi"/>
|
||||
<block byteOffset="40000" id="inc5" length="1000" valueType="eFloat64Usi"/>
|
||||
<block byteOffset="48000" id="inc6" length="1000" valueType="eFloat64Usi"/>
|
||||
<block byteOffset="56000" id="inc7" length="1000" valueType="eFloat64Usi"/>
|
||||
<block byteOffset="64000" id="inc8" length="1000" valueType="eFloat64Usi"/>
|
||||
<block byteOffset="72000" id="inc9" length="1000" valueType="eFloat64Usi"/>
|
||||
</file>
|
||||
</usi:include>
|
||||
|
||||
<usi:data>
|
||||
<double_sequence id="usi1">
|
||||
<values external="inc0"/>
|
||||
</double_sequence>
|
||||
<double_sequence id="usi2">
|
||||
<values external="inc1"/>
|
||||
</double_sequence>
|
||||
<double_sequence id="usi3">
|
||||
<values external="inc2"/>
|
||||
</double_sequence>
|
||||
<double_sequence id="usi4">
|
||||
<values external="inc3"/>
|
||||
</double_sequence>
|
||||
<double_sequence id="usi5">
|
||||
<values external="inc4"/>
|
||||
</double_sequence>
|
||||
<double_sequence id="usi6">
|
||||
<values external="inc5"/>
|
||||
</double_sequence>
|
||||
<double_sequence id="usi7">
|
||||
<values external="inc6"/>
|
||||
</double_sequence>
|
||||
<double_sequence id="usi8">
|
||||
<values external="inc7"/>
|
||||
</double_sequence>
|
||||
<double_sequence id="usi9">
|
||||
<values external="inc8"/>
|
||||
</double_sequence>
|
||||
<double_sequence id="usi10">
|
||||
<values external="inc9"/>
|
||||
</double_sequence>
|
||||
<tdm_root id="usi11">
|
||||
<name>SineData.TDM</name>
|
||||
<description>Sine signals of various amplitudes and frequencies.</description>
|
||||
<title>SineData</title>
|
||||
<author>National Instruments</author>
|
||||
<datetime>2008-05-06T17:20:12.65074539184570313</datetime>
|
||||
<channelgroups>#xpointer(id("usi12") id("usi13"))</channelgroups>
|
||||
</tdm_root>
|
||||
<tdm_channelgroup id="usi12">
|
||||
<name>Amplitudes</name>
|
||||
<description>Sine Signals of various amplitudes.</description>
|
||||
<root>#xpointer(id("usi11"))</root>
|
||||
<instance_attributes>
|
||||
<double_attribute name="Frequency">1</double_attribute>
|
||||
</instance_attributes>
|
||||
<channels>#xpointer(id("usi14") id("usi15") id("usi16") id("usi17") id("usi18"))</channels>
|
||||
<submatrices>#xpointer(id("usi24") id("usi25") id("usi26") id("usi27") id("usi28"))</submatrices>
|
||||
</tdm_channelgroup>
|
||||
<tdm_channelgroup id="usi13">
|
||||
<name>Frequencies</name>
|
||||
<description>Sine signals of various frequencies.</description>
|
||||
<root>#xpointer(id("usi11"))</root>
|
||||
<instance_attributes>
|
||||
<double_attribute name="Amplitude">1</double_attribute>
|
||||
</instance_attributes>
|
||||
<channels>#xpointer(id("usi19") id("usi20") id("usi21") id("usi22") id("usi23"))</channels>
|
||||
<submatrices>#xpointer(id("usi29") id("usi30") id("usi31") id("usi32") id("usi33"))</submatrices>
|
||||
</tdm_channelgroup>
|
||||
<tdm_channel id="usi14">
|
||||
<name>A = 1</name>
|
||||
<group>#xpointer(id("usi12"))</group>
|
||||
<datatype>DT_DOUBLE</datatype>
|
||||
<minimum>-0.999997146387718</minimum>
|
||||
<maximum>0.999999682931835</maximum>
|
||||
<instance_attributes>
|
||||
<long_attribute name="NI_ArrayColumn">0</long_attribute>
|
||||
<long_attribute name="NI_ChannelLength">1000</long_attribute>
|
||||
<long_attribute name="NI_DataType">10</long_attribute>
|
||||
</instance_attributes>
|
||||
<local_columns>#xpointer(id("usi34"))</local_columns>
|
||||
</tdm_channel>
|
||||
<tdm_channel id="usi15">
|
||||
<name>A = 2</name>
|
||||
<group>#xpointer(id("usi12"))</group>
|
||||
<datatype>DT_DOUBLE</datatype>
|
||||
<minimum>-1.99999429277544</minimum>
|
||||
<maximum>1.99999936586367</maximum>
|
||||
<instance_attributes>
|
||||
<long_attribute name="NI_ArrayColumn">1</long_attribute>
|
||||
<long_attribute name="NI_ChannelLength">1000</long_attribute>
|
||||
<long_attribute name="NI_DataType">10</long_attribute>
|
||||
</instance_attributes>
|
||||
<local_columns>#xpointer(id("usi35"))</local_columns>
|
||||
</tdm_channel>
|
||||
<tdm_channel id="usi16">
|
||||
<name>A = 4</name>
|
||||
<group>#xpointer(id("usi12"))</group>
|
||||
<datatype>DT_DOUBLE</datatype>
|
||||
<minimum>-3.99998858555087</minimum>
|
||||
<maximum>3.99999873172734</maximum>
|
||||
<instance_attributes>
|
||||
<long_attribute name="NI_ArrayColumn">2</long_attribute>
|
||||
<long_attribute name="NI_ChannelLength">1000</long_attribute>
|
||||
<long_attribute name="NI_DataType">10</long_attribute>
|
||||
</instance_attributes>
|
||||
<local_columns>#xpointer(id("usi36"))</local_columns>
|
||||
</tdm_channel>
|
||||
<tdm_channel id="usi17">
|
||||
<name>A = 8</name>
|
||||
<group>#xpointer(id("usi12"))</group>
|
||||
<datatype>DT_DOUBLE</datatype>
|
||||
<minimum>-7.99997717110174</minimum>
|
||||
<maximum>7.99999746345468</maximum>
|
||||
<instance_attributes>
|
||||
<long_attribute name="NI_ArrayColumn">3</long_attribute>
|
||||
<long_attribute name="NI_ChannelLength">1000</long_attribute>
|
||||
<long_attribute name="NI_DataType">10</long_attribute>
|
||||
</instance_attributes>
|
||||
<local_columns>#xpointer(id("usi37"))</local_columns>
|
||||
</tdm_channel>
|
||||
<tdm_channel id="usi18">
|
||||
<name>A = 16</name>
|
||||
<group>#xpointer(id("usi12"))</group>
|
||||
<datatype>DT_DOUBLE</datatype>
|
||||
<minimum>-15.9999543422035</minimum>
|
||||
<maximum>15.9999949269094</maximum>
|
||||
<instance_attributes>
|
||||
<long_attribute name="NI_ArrayColumn">4</long_attribute>
|
||||
<long_attribute name="NI_ChannelLength">1000</long_attribute>
|
||||
<long_attribute name="NI_DataType">10</long_attribute>
|
||||
</instance_attributes>
|
||||
<local_columns>#xpointer(id("usi38"))</local_columns>
|
||||
</tdm_channel>
|
||||
<tdm_channel id="usi19">
|
||||
<name>F = 1</name>
|
||||
<group>#xpointer(id("usi13"))</group>
|
||||
<datatype>DT_DOUBLE</datatype>
|
||||
<minimum>-0.999997146387718</minimum>
|
||||
<maximum>0.999999682931835</maximum>
|
||||
<instance_attributes>
|
||||
<long_attribute name="NI_ArrayColumn">0</long_attribute>
|
||||
<long_attribute name="NI_ChannelLength">1000</long_attribute>
|
||||
<long_attribute name="NI_DataType">10</long_attribute>
|
||||
</instance_attributes>
|
||||
<local_columns>#xpointer(id("usi39"))</local_columns>
|
||||
</tdm_channel>
|
||||
<tdm_channel id="usi20">
|
||||
<name>F = 2</name>
|
||||
<group>#xpointer(id("usi13"))</group>
|
||||
<datatype>DT_DOUBLE</datatype>
|
||||
<minimum>-0.999999230697499</minimum>
|
||||
<maximum>0.999995986891472</maximum>
|
||||
<instance_attributes>
|
||||
<long_attribute name="NI_ArrayColumn">1</long_attribute>
|
||||
<long_attribute name="NI_ChannelLength">1000</long_attribute>
|
||||
<long_attribute name="NI_DataType">10</long_attribute>
|
||||
</instance_attributes>
|
||||
<local_columns>#xpointer(id("usi40"))</local_columns>
|
||||
</tdm_channel>
|
||||
<tdm_channel id="usi21">
|
||||
<name>F = 4</name>
|
||||
<group>#xpointer(id("usi13"))</group>
|
||||
<datatype>DT_DOUBLE</datatype>
|
||||
<minimum>-0.999999230697499</minimum>
|
||||
<maximum>0.99994907791452</maximum>
|
||||
<instance_attributes>
|
||||
<long_attribute name="NI_ArrayColumn">2</long_attribute>
|
||||
<long_attribute name="NI_ChannelLength">1000</long_attribute>
|
||||
<long_attribute name="NI_DataType">10</long_attribute>
|
||||
</instance_attributes>
|
||||
<local_columns>#xpointer(id("usi41"))</local_columns>
|
||||
</tdm_channel>
|
||||
<tdm_channel id="usi22">
|
||||
<name>F = 8</name>
|
||||
<group>#xpointer(id("usi13"))</group>
|
||||
<datatype>DT_DOUBLE</datatype>
|
||||
<minimum>-0.999999230697499</minimum>
|
||||
<maximum>0.999996490345607</maximum>
|
||||
<instance_attributes>
|
||||
<long_attribute name="NI_ArrayColumn">3</long_attribute>
|
||||
<long_attribute name="NI_ChannelLength">1000</long_attribute>
|
||||
<long_attribute name="NI_DataType">10</long_attribute>
|
||||
</instance_attributes>
|
||||
<local_columns>#xpointer(id("usi42"))</local_columns>
|
||||
</tdm_channel>
|
||||
<tdm_channel id="usi23">
|
||||
<name>F = 16</name>
|
||||
<group>#xpointer(id("usi13"))</group>
|
||||
<datatype>DT_DOUBLE</datatype>
|
||||
<minimum>-0.999999230697499</minimum>
|
||||
<maximum>0.999993076284592</maximum>
|
||||
<instance_attributes>
|
||||
<long_attribute name="NI_ArrayColumn">4</long_attribute>
|
||||
<long_attribute name="NI_ChannelLength">1000</long_attribute>
|
||||
<long_attribute name="NI_DataType">10</long_attribute>
|
||||
</instance_attributes>
|
||||
<local_columns>#xpointer(id("usi43"))</local_columns>
|
||||
</tdm_channel>
|
||||
<submatrix id="usi24">
|
||||
<name>Untitled</name>
|
||||
<measurement>#xpointer(id("usi12"))</measurement>
|
||||
<number_of_rows>1000</number_of_rows>
|
||||
<local_columns>#xpointer(id("usi34"))</local_columns>
|
||||
</submatrix>
|
||||
<submatrix id="usi25">
|
||||
<name>Untitled</name>
|
||||
<measurement>#xpointer(id("usi12"))</measurement>
|
||||
<number_of_rows>1000</number_of_rows>
|
||||
<local_columns>#xpointer(id("usi35"))</local_columns>
|
||||
</submatrix>
|
||||
<submatrix id="usi26">
|
||||
<name>Untitled</name>
|
||||
<measurement>#xpointer(id("usi12"))</measurement>
|
||||
<number_of_rows>1000</number_of_rows>
|
||||
<local_columns>#xpointer(id("usi36"))</local_columns>
|
||||
</submatrix>
|
||||
<submatrix id="usi27">
|
||||
<name>Untitled</name>
|
||||
<measurement>#xpointer(id("usi12"))</measurement>
|
||||
<number_of_rows>1000</number_of_rows>
|
||||
<local_columns>#xpointer(id("usi37"))</local_columns>
|
||||
</submatrix>
|
||||
<submatrix id="usi28">
|
||||
<name>Untitled</name>
|
||||
<measurement>#xpointer(id("usi12"))</measurement>
|
||||
<number_of_rows>1000</number_of_rows>
|
||||
<local_columns>#xpointer(id("usi38"))</local_columns>
|
||||
</submatrix>
|
||||
<submatrix id="usi29">
|
||||
<name>Untitled</name>
|
||||
<measurement>#xpointer(id("usi13"))</measurement>
|
||||
<number_of_rows>1000</number_of_rows>
|
||||
<local_columns>#xpointer(id("usi39"))</local_columns>
|
||||
</submatrix>
|
||||
<submatrix id="usi30">
|
||||
<name>Untitled</name>
|
||||
<measurement>#xpointer(id("usi13"))</measurement>
|
||||
<number_of_rows>1000</number_of_rows>
|
||||
<local_columns>#xpointer(id("usi40"))</local_columns>
|
||||
</submatrix>
|
||||
<submatrix id="usi31">
|
||||
<name>Untitled</name>
|
||||
<measurement>#xpointer(id("usi13"))</measurement>
|
||||
<number_of_rows>1000</number_of_rows>
|
||||
<local_columns>#xpointer(id("usi41"))</local_columns>
|
||||
</submatrix>
|
||||
<submatrix id="usi32">
|
||||
<name>Untitled</name>
|
||||
<measurement>#xpointer(id("usi13"))</measurement>
|
||||
<number_of_rows>1000</number_of_rows>
|
||||
<local_columns>#xpointer(id("usi42"))</local_columns>
|
||||
</submatrix>
|
||||
<submatrix id="usi33">
|
||||
<name>Untitled</name>
|
||||
<measurement>#xpointer(id("usi13"))</measurement>
|
||||
<number_of_rows>1000</number_of_rows>
|
||||
<local_columns>#xpointer(id("usi43"))</local_columns>
|
||||
</submatrix>
|
||||
<localcolumn id="usi34">
|
||||
<name>Untitled</name>
|
||||
<measurement_quantity>#xpointer(id("usi14"))</measurement_quantity>
|
||||
<submatrix>#xpointer(id("usi24"))</submatrix>
|
||||
<global_flag>15</global_flag>
|
||||
<independent>0</independent>
|
||||
<sequence_representation>explicit</sequence_representation>
|
||||
<values>#xpointer(id("usi1"))</values>
|
||||
</localcolumn>
|
||||
<localcolumn id="usi35">
|
||||
<name>Untitled</name>
|
||||
<measurement_quantity>#xpointer(id("usi15"))</measurement_quantity>
|
||||
<submatrix>#xpointer(id("usi25"))</submatrix>
|
||||
<global_flag>15</global_flag>
|
||||
<independent>0</independent>
|
||||
<sequence_representation>explicit</sequence_representation>
|
||||
<values>#xpointer(id("usi2"))</values>
|
||||
</localcolumn>
|
||||
<localcolumn id="usi36">
|
||||
<name>Untitled</name>
|
||||
<measurement_quantity>#xpointer(id("usi16"))</measurement_quantity>
|
||||
<submatrix>#xpointer(id("usi26"))</submatrix>
|
||||
<global_flag>15</global_flag>
|
||||
<independent>0</independent>
|
||||
<sequence_representation>explicit</sequence_representation>
|
||||
<values>#xpointer(id("usi3"))</values>
|
||||
</localcolumn>
|
||||
<localcolumn id="usi37">
|
||||
<name>Untitled</name>
|
||||
<measurement_quantity>#xpointer(id("usi17"))</measurement_quantity>
|
||||
<submatrix>#xpointer(id("usi27"))</submatrix>
|
||||
<global_flag>15</global_flag>
|
||||
<independent>0</independent>
|
||||
<sequence_representation>explicit</sequence_representation>
|
||||
<values>#xpointer(id("usi4"))</values>
|
||||
</localcolumn>
|
||||
<localcolumn id="usi38">
|
||||
<name>Untitled</name>
|
||||
<measurement_quantity>#xpointer(id("usi18"))</measurement_quantity>
|
||||
<submatrix>#xpointer(id("usi28"))</submatrix>
|
||||
<global_flag>15</global_flag>
|
||||
<independent>0</independent>
|
||||
<sequence_representation>explicit</sequence_representation>
|
||||
<values>#xpointer(id("usi5"))</values>
|
||||
</localcolumn>
|
||||
<localcolumn id="usi39">
|
||||
<name>Untitled</name>
|
||||
<measurement_quantity>#xpointer(id("usi19"))</measurement_quantity>
|
||||
<submatrix>#xpointer(id("usi29"))</submatrix>
|
||||
<global_flag>15</global_flag>
|
||||
<independent>0</independent>
|
||||
<sequence_representation>explicit</sequence_representation>
|
||||
<values>#xpointer(id("usi6"))</values>
|
||||
</localcolumn>
|
||||
<localcolumn id="usi40">
|
||||
<name>Untitled</name>
|
||||
<measurement_quantity>#xpointer(id("usi20"))</measurement_quantity>
|
||||
<submatrix>#xpointer(id("usi30"))</submatrix>
|
||||
<global_flag>15</global_flag>
|
||||
<independent>0</independent>
|
||||
<sequence_representation>explicit</sequence_representation>
|
||||
<values>#xpointer(id("usi7"))</values>
|
||||
</localcolumn>
|
||||
<localcolumn id="usi41">
|
||||
<name>Untitled</name>
|
||||
<measurement_quantity>#xpointer(id("usi21"))</measurement_quantity>
|
||||
<submatrix>#xpointer(id("usi31"))</submatrix>
|
||||
<global_flag>15</global_flag>
|
||||
<independent>0</independent>
|
||||
<sequence_representation>explicit</sequence_representation>
|
||||
<values>#xpointer(id("usi8"))</values>
|
||||
</localcolumn>
|
||||
<localcolumn id="usi42">
|
||||
<name>Untitled</name>
|
||||
<measurement_quantity>#xpointer(id("usi22"))</measurement_quantity>
|
||||
<submatrix>#xpointer(id("usi32"))</submatrix>
|
||||
<global_flag>15</global_flag>
|
||||
<independent>0</independent>
|
||||
<sequence_representation>explicit</sequence_representation>
|
||||
<values>#xpointer(id("usi9"))</values>
|
||||
</localcolumn>
|
||||
<localcolumn id="usi43">
|
||||
<name>Untitled</name>
|
||||
<measurement_quantity>#xpointer(id("usi23"))</measurement_quantity>
|
||||
<submatrix>#xpointer(id("usi33"))</submatrix>
|
||||
<global_flag>15</global_flag>
|
||||
<independent>0</independent>
|
||||
<sequence_representation>explicit</sequence_representation>
|
||||
<values>#xpointer(id("usi10"))</values>
|
||||
</localcolumn>
|
||||
</usi:data>
|
||||
|
||||
</usi:tdm>
|
||||
Binary file not shown.
@ -1,63 +0,0 @@
|
||||
|
||||
#include <iostream>
|
||||
#include <fstream>
|
||||
#include <iterator>
|
||||
#include <vector>
|
||||
|
||||
int main(int argc, char* argv[])
|
||||
{
|
||||
for ( int i = 0; i < argc; i++ )
|
||||
{
|
||||
std::cout<<argv[i]<<"\n";
|
||||
}
|
||||
if ( argc < 3 )
|
||||
{
|
||||
std::cout<<"missing file argument\n";
|
||||
return 1;
|
||||
}
|
||||
|
||||
std::ifstream fin(argv[1],std::ifstream::binary);
|
||||
|
||||
std::vector<unsigned char> tdxbuf((std::istreambuf_iterator<char>(fin)),
|
||||
(std::istreambuf_iterator<char>()));
|
||||
|
||||
fin.close();
|
||||
|
||||
std::cout<<"length of buffer: "<<tdxbuf.size()<<"\n";
|
||||
|
||||
|
||||
unsigned long int dtsize = 8;
|
||||
|
||||
if ( tdxbuf.size()%dtsize != 0 )
|
||||
{
|
||||
std::cout<<"mismatch between datatype size and length of buffer\n";
|
||||
return 1;
|
||||
}
|
||||
|
||||
|
||||
unsigned long int nums = tdxbuf.size()/dtsize;
|
||||
|
||||
std::cout<<"number of entities: "<<nums<<"\n";
|
||||
|
||||
std::vector<unsigned char> tdxbufrev(tdxbuf.size());
|
||||
|
||||
for ( unsigned long int i = 0; i < nums; i++ )
|
||||
{
|
||||
for ( unsigned long int j = 0; j < dtsize; j++ )
|
||||
{
|
||||
tdxbufrev[i*dtsize+j] = tdxbuf[(i+1)*dtsize-(j+1)];
|
||||
}
|
||||
}
|
||||
|
||||
std::ofstream fou(argv[2],std::ifstream::binary);
|
||||
|
||||
for ( unsigned char ch: tdxbufrev)
|
||||
{
|
||||
fou<<ch;
|
||||
}
|
||||
|
||||
fou.close();
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
21
src/main.cpp
21
src/main.cpp
@ -1,6 +1,6 @@
|
||||
// ------------------------------------------------------------------------- //
|
||||
|
||||
#include "tdm_termite.hpp"
|
||||
#include "tdm_reaper.hpp"
|
||||
|
||||
#include <filesystem>
|
||||
#include <regex>
|
||||
@ -11,17 +11,16 @@
|
||||
|
||||
const std::string gittag("TAGSTRING");
|
||||
const std::string githash("HASHSTRING");
|
||||
const std::string timestamp("TIMESTAMPSTRING");
|
||||
|
||||
void show_usage()
|
||||
{
|
||||
std::cout<<"\n"
|
||||
<<"tdmtermite ["<<gittag<<"-g"<<githash<<"-"<<timestamp<<"] (https://github.com/RecordEvolution/TDMtermite.git)"
|
||||
<<"tdmreaper ["<<gittag<<"-g"<<githash<<"] (github.com/RecordEvolution/tdm_ripper.git)"
|
||||
<<"\n\n"
|
||||
<<"Decode TDM/TDX files and dump data as *.csv"
|
||||
<<"\n\n"
|
||||
<<"Usage:\n\n"
|
||||
<<" tdmtermite <tdm-file> <tdx-file> [options]"
|
||||
<<" tdmreaper <tdm-file> <tdx-file> [options]"
|
||||
<<"\n\n"
|
||||
<<"Options:"
|
||||
<<"\n\n"
|
||||
@ -56,7 +55,7 @@ void show_usage()
|
||||
typedef std::map<std::string,std::string> optkeys;
|
||||
|
||||
const std::string argmsg = std::string("both .tdm and .tdx file must be provided!");
|
||||
const std::string arguse = std::string("see $ tdmtermite --help for usage");
|
||||
const std::string arguse = std::string("see $ tdmreaper --help for usage");
|
||||
|
||||
optkeys parse_args(int argc, char* argv[], bool showargs = false)
|
||||
{
|
||||
@ -79,7 +78,7 @@ optkeys parse_args(int argc, char* argv[], bool showargs = false)
|
||||
else if ( std::string(argv[1]) == std::string("--version")
|
||||
|| std::string(argv[1]) == std::string("-v") )
|
||||
{
|
||||
std::cout<<"tdmtermite "<<gittag<<"-g"<<githash<<"-"<<timestamp<<"\n";
|
||||
std::cout<<"tdmreaper "<<gittag<<"-g"<<githash<<"\n";
|
||||
}
|
||||
else
|
||||
{
|
||||
@ -271,8 +270,8 @@ int main(int argc, char* argv[])
|
||||
std::string csvsep = cfgopts.count("csvsep") == 1 ? cfgopts.at("csvsep")
|
||||
: std::string(",");
|
||||
|
||||
// declare and initialize tdm_termite instance
|
||||
tdm_termite jack;
|
||||
// declare and initialize tdm_reaper instance
|
||||
tdm_reaper jack;
|
||||
try {
|
||||
jack.submit_files(cfgopts.at("tdm"),cfgopts.at("tdx"),false);
|
||||
} catch (const std::exception& e) {
|
||||
@ -285,13 +284,13 @@ int main(int argc, char* argv[])
|
||||
if ( showroot ) std::cout<<"\n"<<jack.get_root().get_info()<<"\n";
|
||||
|
||||
// get complete channel(-group) overview
|
||||
format grpformatter(16,false,false,' ');
|
||||
format grpformatter(26,false,false,' ');
|
||||
if (listgroups) std::cout<<"\n"<<jack.get_overview<tdm_channelgroup>(grpformatter)<<"\n";
|
||||
format chformatter(16,false,false,' ');
|
||||
format chformatter(14,false,false,' ');
|
||||
if (listchannels) std::cout<<"\n"<<jack.get_channel_overview(chformatter)<<"\n";
|
||||
|
||||
// get complete submatrix/localcolumns overview
|
||||
format formatter(16,false,false,' ');
|
||||
format formatter(18,false,false,' ');
|
||||
if (listblocks) std::cout<<jack.get_overview<block>(formatter)<<"\n";
|
||||
if (listsubmatrices) std::cout<<jack.get_overview<submatrix>(formatter)<<"\n";
|
||||
if (listlocalcolumns) std::cout<<jack.get_overview<localcolumn>(formatter)<<"\n";
|
||||
|
||||
33
src/test.cpp
33
src/test.cpp
@ -1,33 +0,0 @@
|
||||
// ------------------------------------------------------------------------- //
|
||||
|
||||
#include "tdm_termite.hpp"
|
||||
|
||||
#include <filesystem>
|
||||
#include <regex>
|
||||
#include <thread>
|
||||
#include <chrono>
|
||||
|
||||
// ------------------------------------------------------------------------- //
|
||||
|
||||
int main(int argc, char* argv[])
|
||||
{
|
||||
std::string tdmfile(argv[1]);
|
||||
std::string tdxfile(argv[2]);
|
||||
|
||||
std::cout<<tdmfile<<"\n"<<tdxfile<<"\n";
|
||||
|
||||
pugi::xml_document xml_doc;
|
||||
pugi::xml_parse_result xml_result;
|
||||
|
||||
// load XML document from stream
|
||||
std::ifstream fin(tdmfile.c_str());
|
||||
xml_result = xml_doc.load(fin);
|
||||
fin.close();
|
||||
|
||||
std::cout<<"\nloading "<<tdmfile<<": "<<xml_result.description()<<"\n";
|
||||
std::cout<<"encoding: "<<(pugi::xml_encoding)xml_result.encoding<<"\n\n";
|
||||
|
||||
std::this_thread::sleep_for(std::chrono::milliseconds(4000));
|
||||
|
||||
return 0;
|
||||
}
|
||||
Loading…
x
Reference in New Issue
Block a user